Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0199 ATGGAAGAGGCTGAGACTTTGCCAACCTCAGATGATGCAGATCAATCAACTGGAGGAGAAGAAAAACCTACTCCCAAACAAGATTCTCTTCACAAGAATCATCACCAAGAACAAAGAATCAAAATGGTGAGAGTTGAAATGAGCCAAGCAAGACAAGAAAACCAGAGGCTAAAGAGGAGTTTGGATCAAATAATGAAGGATTACGAAATCCTCAAAAGACAGTTCCATGAAATCACCAAAAAAGAAGGCAAAAAAACAACACAAACAAGTGCAAATACCATCAATAATGACAAGGTTGAAGAATTTGAGGACATGGTTTCACTCACATTAGGAAGATTCTCAAGTGATCAAAACAAGGATCATAAAATGTTGGATTTGGGATCTCTTGGAGTTGAAAAAATAAAGTATAACAAAACCCCATCAATGGAAAACCTTCCAAGTCCAACGGATAGTGAACAAGCGAAAGAGGAAGAAGCCGGAGAGACTTGGCCGCCGAGTGAAGTGTCGAAGAGTACGTCGGCGCTGGCGGCCGGAGAAGATGAAGTTTCTGAGCACAATAATCCTCCCAAGAAAACTAGGGTTTGTGTGAGAGTTCGGTGTGATACCCCAACGTTGAATGATGGATGTCAATGGAGAAAATATGGACAGAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCTCATGTCCAGTTAGGAAACAGGTGCAAAGAAGTATTGATGATATGTCCATACTAATCATCACCTATGAAGGAACTCACAACCACCCTCTACCTGTTTCAGCCATGTCCATGGCTTCCACCACCTCCGCAGCCGCCTTGATGCTCCTCTCGGGTGCTTCCTCCACGTCTCGACTTAGCCTTAACCCTTCACCGATCGGGACCTCGACCACGTATCTCCATGGAATAAACATGCATCTCACTAACAACACCAATTCAAATCAACTCTACTTGCCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACCTTAGACTTAACTTCAAATCCTCCCTCAACTTCCTCCTCTCCTTTCCATAAAATCCCTTCAACTTATCCCTCAAAACATCCCTTCACCAGCCTTGATTTTGGCTCTCCTCAACCCAACTTCATGTCTTGGAACAACAACAATAGTGGCTATGCCAATAATAACCAACCTTATAACATAAGCAAAAATGCAATAGGAATGTCATCAGACCTTGCTAAACAACTCTCTCCCCACAGTAACATCTATGGAGCCTGTCTTCAACAATTTACCAAACCTTCGACTCCGCCACTCCCTCCACTGCCTCTACCAGACACAATAGCGGCAGCAACAAAGGCAATTACGTCTGACCCGAGTTTCCAATCGGCATTGGTGGCTGCCCTCAGCTCAATCATTAGCGGTGGAAATGGGGGCGAGGCAGTACAGCCAATAGCTAGCTACATTCAAGCAGCACAGGCTCCTCCACCATTGACAGGCTCCACCTCTAAGAGTTCTTCATCTCCTAGTGGTAGTAGAGATAATAATACCAAGTGA 1551 44.23 MEEAETLPTSDDADQSTGGEEKPTPKQDSLHKNHHQEQRIKMVRVEMSQARQENQRLKRSLDQIMKDYEILKRQFHEITKKEGKKTTQTSANTINNDKVEEFEDMVSLTLGRFSSDQNKDHKMLDLGSLGVEKIKYNKTPSMENLPSPTDSEQAKEEEAGETWPPSEVSKSTSALAAGEDEVSEHNNPPKKTRVCVRVRCDTPTLNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSIDDMSILIITYEGTHNHPLPVSAMSMASTTSAAALMLLSGASSTSRLSLNPSPIGTSTTYLHGINMHLTNNTNSNQLYLPNSSMLSSSLNHPTITLDLTSNPPSTSSSPFHKIPSTYPSKHPFTSLDFGSPQPNFMSWNNNNSGYANNNQPYNISKNAIGMSSDLAKQLSPHSNIYGACLQQFTKPSTPPLPPLPLPDTIAAATKAITSDPSFQSALVAALSSIISGGNGGEAVQPIASYIQAAQAPPPLTGSTSKSSSSPSGSRDNNTK 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1129753 1134400 + Sed0026150.1 Sed08g0199 721975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0199 516 ProSiteProfiles WRKY domain profile. 200 266 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0199 516 MobiDBLite consensus disorder prediction 1 39 - -
Sed08g0199 516 MobiDBLite consensus disorder prediction 15 39 - -
Sed08g0199 516 MobiDBLite consensus disorder prediction 492 516 - -
Sed08g0199 516 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 474 IPR044810 GO:0003700(InterPro)
Sed08g0199 516 FunFam probable WRKY transcription factor 31 190 267 - -
Sed08g0199 516 Pfam WRKY DNA -binding domain 206 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0199 516 Coils Coil 33 81 - -
Sed08g0199 516 Gene3D WRKY domain 190 267 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0199 516 MobiDBLite consensus disorder prediction 491 516 - -
Sed08g0199 516 MobiDBLite consensus disorder prediction 137 189 - -
Sed08g0199 516 SMART WRKY_cls 205 265 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0199 516 SUPERFAMILY WRKY DNA-binding domain 198 266 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0199 Sed-Chr8:1129753 Sed13g0515 Sed-Chr13:3508628 2.00E-40 dispersed
Sed12g1936 Sed-Chr12:30465888 Sed08g0199 Sed-Chr8:1129753 2.20E-178 wgd
Sed08g0199 Sed-Chr8:1129753 Sed08g2579 Sed-Chr8:38266746 5.40E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39250 PF03106 WRKY 3.00E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0199 - - - 0.0