Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0209 ATGGATGAAGGTGATGAATTCCACCACCACCCCCACCGCCCCAACTTCCCATTTCAATTGCTTGAAAAGAAAGACGGTAGCGGCAACGGCGACGGCGACGCCTCCTGCTCCGCCGATCCCACCCCCGCTACAGCCGTCGCCGCCCCCGTTACCGCCCCGGTGGAGCTTTCCAAGAAAACCCCACCAAAGAGAACCTCCACCAAAGACCGGCACACCAAAGTCGACGGCCGCGGCCGCCGCATCCGAATGCCGGCTCTGTGCGCGGCCAGGGTGTTTCAACTGACCCGCGAACTGGGTCACAAGTCCGACGGCGAAACCATCGAGTGGCTACTCCAACAGGCGGAGCCCGCCGTGATTGCCGCCACCGGAACCGGCACAATTCCAGCCAATTTCACGTCTCTGAACATTTCGTTACGTAGCTCTGGCTCAACCATGTCCGTCCCTTCACAGCTCCGATCATCTTCCTATTATAACCCAAATTTCTCTCTTAATCAACAACGGCGAACCCTTTTCCCCGGATTTGGCCTCTCGTCGGAAAATTCCTCCTCTGCTCTGCTCAATTTCGGAAATAATCTGCTTCAAGCCAAATCGGAAATTAGAGATACCACCACTGCTTTGGACCTTTCAAACGCGGCGGAGGAAATTAGTATTGGCCGGAAGAGACGGCCGTCGACGGAGCAGGAGTTGTCGTCGTCGTCGCCGCCACCGCCGTCGCAGCATCAATTGGGTGGGTATTTACTGCAGTCTAGTACAGGGGCGATTCCGGCGAGCCACGGCGGAACTCAGGTACCGGCGAATTTTTGGATGGTTGCCAATACGAATAATCAAATGATGGGCGGCGATCCCATTTGGACGTTTCCGTCGGTTAATAACAGCGGTTTGTACAGAGGGACGATGTCGAGTGGGTTGCATTTCATGAATTTTCCGGCGCCGGTCGCGTTGGTTCCGGGTCAGCAATTCGGGTCGGGTCCCGGCGGTGGCGGAGGGAACAACAATTCCGGCGAGGGGCACTTGAATATACTTGCAGGTCTGAATAATCCTTACCGGTCGGTTTCCGGCGGCGGCGGCGTTATGGAGCCGCAGGGAAGTGGGTCCCACTCGCATCACGGCGGCGGAGATGACCGGCACGATTCAACCAGCCACCACTCGTAG 1152 57.29 MDEGDEFHHHPHRPNFPFQLLEKKDGSGNGDGDASCSADPTPATAVAAPVTAPVELSKKTPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSSYYNPNFSLNQQRRTLFPGFGLSSENSSSALLNFGNNLLQAKSEIRDTTTALDLSNAAEEISIGRKRRPSTEQELSSSSPPPPSQHQLGGYLLQSSTGAIPASHGGTQVPANFWMVANTNNQMMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGPGGGGGNNNSGEGHLNILAGLNNPYRSVSGGGGVMEPQGSGSHSHHGGGDDRHDSTSHHS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1194138 1195904 - Sed0023822.1 Sed08g0209 721985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0209 383 MobiDBLite consensus disorder prediction 350 383 - -
Sed08g0209 383 MobiDBLite consensus disorder prediction 1 74 - -
Sed08g0209 383 Pfam TCP family transcription factor 65 228 IPR017887 -
Sed08g0209 383 MobiDBLite consensus disorder prediction 214 244 - -
Sed08g0209 383 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Sed08g0209 383 MobiDBLite consensus disorder prediction 227 244 - -
Sed08g0209 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 57 361 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed08g0209 383 MobiDBLite consensus disorder prediction 1 19 - -
Sed08g0209 383 MobiDBLite consensus disorder prediction 368 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0209 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0108 Sed-Chr7:1018315 Sed08g0209 Sed-Chr8:1194138 2.30E-29 dispersed
Sed08g0209 Sed-Chr8:1194138 Sed08g1502 Sed-Chr8:29579047 7.00E-30 dispersed
Sed04g0269 Sed-Chr4:2009838 Sed08g0209 Sed-Chr8:1194138 2.40E-36 transposed
Sed12g1943 Sed-Chr12:30515749 Sed08g0209 Sed-Chr8:1194138 1.60E-123 wgd
Sed06g1538 Sed-Chr6:40133483 Sed08g0209 Sed-Chr8:1194138 6.50E-68 wgd
Sed08g0209 Sed-Chr8:1194138 Sed08g2057 Sed-Chr8:34836573 2.50E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39252 PF03634 TCP 2.10E-39 No_clan Sed TF