Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0214 ATGGCGGAAGAAACAACCCCTCAACCCGCCGGAAAAGATCCGGAGGTAAGCAACCCCGGCGCCGATGATACGGAAGTTAAAAATGGCGATGCAAATCCGAAGCGAGAGAGGGAGGAAGAAATCGCCGGCGACAATGCCGGAGAGGTGAAAAAGCCGAAGGTGGAGGAAAGCGTCGAGAAGGCGGCGCTTGGTCCGGTGAGTTTAGGCCCAAAGAGCTTTGGATCATCGGTGGAGCTGTTCGATTACTTCTACAACTTCCTTCACAACTGGCCTGCTAACGTGAATGTGAACCAGTACGAGAAGATGGTGCTGATGGATTTGATTAAGAAGGGGCATGTAGAACCGACGAAAAAGATAGGGTGTGGAATCGGTGCTTTCCAAATTCAATACCACCCTATGTGGAAAAGCAAATGCTTCTTCCTCATTCGGGAGGATGGCTCAACCGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCTCTGCCTGAAAACTTGAAGTTAAAGTCTGATGCAAACAGGTTGTCGGGTGGCGGCGGTAAGCACCGCGGTGGAGGACGAGGTGGCGGACGCGGAAGAGGAGGTAGGGGGAGAAACTGA 603 52.07 MAEETTPQPAGKDPEVSNPGADDTEVKNGDANPKREREEEIAGDNAGEVKKPKVEESVEKAALGPVSLGPKSFGSSVELFDYFYNFLHNWPANVNVNQYEKMVLMDLIKKGHVEPTKKIGCGIGAFQIQYHPMWKSKCFFLIREDGSTDDFSFRKCVDHILPLPENLKLKSDANRLSGGGGKHRGGGRGGGRGRGGRGRN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1252526 1255327 + Sed0006743.1 Sed08g0214 721990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0214 200 MobiDBLite consensus disorder prediction 1 54 - -
Sed08g0214 200 PANTHER PROTEIN EMBRYO DEFECTIVE 514 14 175 IPR044673 GO:0005634(PANTHER)|GO:0009507(PANTHER)|GO:0009658(PANTHER)|GO:0017126(PANTHER)|GO:1901259(PANTHER)
Sed08g0214 200 Pfam Protein of unknown function (DUF3223) 85 157 - -
Sed08g0214 200 MobiDBLite consensus disorder prediction 172 200 - -
Sed08g0214 200 FunFam Predicted protein 62 160 - -
Sed08g0214 200 MobiDBLite consensus disorder prediction 27 54 - -
Sed08g0214 200 Gene3D - 61 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0214 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0214 Sed-Chr8:1252526 Sed08g2855 Sed-Chr8:39747951 8.70E-08 dispersed
Sed12g1948 Sed-Chr12:30566102 Sed08g0214 Sed-Chr8:1252526 4.70E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g556 . . . . . . Bma06g00170 . . . Cma10g00190 Cma11g00144 Car10g00180 Car11g00150 Sed08g0214 . Cpe04g01500 Bhi02g00326 Tan09g2124 Cmetu02g0201 . Hepe09g0121 . . Cla06g01592 Cam06g1765 Cec06g1818 Cco06g1824 Clacu06g1728 Cmu06g1672 Cre06g2488 Cone2ag0844 Cone16ag0171 . . . . . . . . . Bda14g00853 . . . . . Cmo10g00207 Cmo11g00165 . . . . . Cpe18g00795 . . . . . . . . . . . . . . Lsi06g01465 Csa01g00233 Chy02g02499 Cme02g01885
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006381 1 1 1 1 0 1 3 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37