Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0215 ATGGGCGAAAATTTGAGGCCAAAGTATGAAGTTATGGTCCCCTTTGAAGACCCTTTTCCCTTTTCATGTCATCTTTCACCTCTCCATTTTAGAACTTACAATTCTGAAATATTGGATTGGAACTCTAATTTTGGGGCTCAAGATACCATTTTTGACGTTGTTCCTTTGTTTGAGAGTTCCCCAAATGACTCCCTTTTCAACCCCATGGATATTGAACCAATTAACACCTTTACACCAGATGGGGTTGAGATTTGGAGTGAAATGGAAGGTGGGTTTGGAATTGGGGTTGAGGAAGAGCCTCTAGTGATTCAAGGAGGTGGAGAAATTGAAATTAAAAATGAAAATTATAATGGGTTGGAGAGAAAAGGAGGGAGGGGCAAAAGAAAGTGCAAGAGTTCATCAAAAATATTGTCAAGAGAGACAATATCTGAGTATTTCTATATGCCAATTGCTGAGGCTGCAAAAGAATTGAATGTGGGACTCACTCTCTTGAAGAAAAGGTGTAGAGAATTGGGCATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAATGTCAAGGAGATTGAAAGGGGAAATGGAGAGGGAGGGGGGAATGGAATGAAAGTAAAGAATGTATTGGGGATATTAGAGAATGAGAAGAAATTAATGGAGGAAAGACCAGATTTGGATTTAGAGGACAAAACAAAGAGGCTTAGACAAGCTTGCTTTAAGGCTAACTACAAAAAAAGAAAGCTATCAGGAATTATCAATTCCCAATATTTCTCCACTAATGAAGATGAAGAAGATGATGAAGAATTGAAATATCTGTTGTCAGATTGTTCATTTTCGTCCAGTAGCAATAGCTTGTTGCTGTAA 873 38.49 MGENLRPKYEVMVPFEDPFPFSCHLSPLHFRTYNSEILDWNSNFGAQDTIFDVVPLFESSPNDSLFNPMDIEPINTFTPDGVEIWSEMEGGFGIGVEEEPLVIQGGGEIEIKNENYNGLERKGGRGKRKCKSSSKILSRETISEYFYMPIAEAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIERGNGEGGGNGMKVKNVLGILENEKKLMEERPDLDLEDKTKRLRQACFKANYKKRKLSGIINSQYFSTNEDEEDDEELKYLLSDCSFSSSSNSLLL 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1257342 1259447 + Sed0021767.1 Sed08g0215 721991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0215 290 ProSiteProfiles RWP-RK domain profile. 120 205 IPR003035 -
Sed08g0215 290 PANTHER PROTEIN RKD4 126 254 IPR044607 GO:0003700(InterPro)
Sed08g0215 290 Pfam RWP-RK domain 137 184 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0215 Sed-Chr8:1257342 Sed10g1069 Sed-Chr10:9758527 3.20E-19 dispersed
Sed05g1782 Sed-Chr5:31450602 Sed08g0215 Sed-Chr8:1257342 7.80E-08 transposed
Sed13g0052 Sed-Chr13:326974 Sed08g0215 Sed-Chr8:1257342 1.60E-30 transposed
Sed12g1949 Sed-Chr12:30576783 Sed08g0215 Sed-Chr8:1257342 1.70E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39255 PF02042 RWP-RK 3.20E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0215 - - - 0.0