Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0215 | ATGGGCGAAAATTTGAGGCCAAAGTATGAAGTTATGGTCCCCTTTGAAGACCCTTTTCCCTTTTCATGTCATCTTTCACCTCTCCATTTTAGAACTTACAATTCTGAAATATTGGATTGGAACTCTAATTTTGGGGCTCAAGATACCATTTTTGACGTTGTTCCTTTGTTTGAGAGTTCCCCAAATGACTCCCTTTTCAACCCCATGGATATTGAACCAATTAACACCTTTACACCAGATGGGGTTGAGATTTGGAGTGAAATGGAAGGTGGGTTTGGAATTGGGGTTGAGGAAGAGCCTCTAGTGATTCAAGGAGGTGGAGAAATTGAAATTAAAAATGAAAATTATAATGGGTTGGAGAGAAAAGGAGGGAGGGGCAAAAGAAAGTGCAAGAGTTCATCAAAAATATTGTCAAGAGAGACAATATCTGAGTATTTCTATATGCCAATTGCTGAGGCTGCAAAAGAATTGAATGTGGGACTCACTCTCTTGAAGAAAAGGTGTAGAGAATTGGGCATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAATGTCAAGGAGATTGAAAGGGGAAATGGAGAGGGAGGGGGGAATGGAATGAAAGTAAAGAATGTATTGGGGATATTAGAGAATGAGAAGAAATTAATGGAGGAAAGACCAGATTTGGATTTAGAGGACAAAACAAAGAGGCTTAGACAAGCTTGCTTTAAGGCTAACTACAAAAAAAGAAAGCTATCAGGAATTATCAATTCCCAATATTTCTCCACTAATGAAGATGAAGAAGATGATGAAGAATTGAAATATCTGTTGTCAGATTGTTCATTTTCGTCCAGTAGCAATAGCTTGTTGCTGTAA | 873 | 38.49 | MGENLRPKYEVMVPFEDPFPFSCHLSPLHFRTYNSEILDWNSNFGAQDTIFDVVPLFESSPNDSLFNPMDIEPINTFTPDGVEIWSEMEGGFGIGVEEEPLVIQGGGEIEIKNENYNGLERKGGRGKRKCKSSSKILSRETISEYFYMPIAEAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIERGNGEGGGNGMKVKNVLGILENEKKLMEERPDLDLEDKTKRLRQACFKANYKKRKLSGIINSQYFSTNEDEEDDEELKYLLSDCSFSSSSNSLLL | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1257342 | 1259447 | + | Sed0021767.1 | Sed08g0215 | 721991 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0215 | 290 | ProSiteProfiles | RWP-RK domain profile. | 120 | 205 | IPR003035 | - | |
Sed08g0215 | 290 | PANTHER | PROTEIN RKD4 | 126 | 254 | IPR044607 | GO:0003700(InterPro) | |
Sed08g0215 | 290 | Pfam | RWP-RK domain | 137 | 184 | IPR003035 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0215 | Sed-Chr8:1257342 | Sed10g1069 | Sed-Chr10:9758527 | 3.20E-19 | dispersed | |
Sed05g1782 | Sed-Chr5:31450602 | Sed08g0215 | Sed-Chr8:1257342 | 7.80E-08 | transposed | |
Sed13g0052 | Sed-Chr13:326974 | Sed08g0215 | Sed-Chr8:1257342 | 1.60E-30 | transposed | |
Sed12g1949 | Sed-Chr12:30576783 | Sed08g0215 | Sed-Chr8:1257342 | 1.70E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39255 | PF02042 | RWP-RK | 3.20E-21 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0215 | - | - | - | 0.0 |