Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0215 ATGGGCGAAAATTTGAGGCCAAAGTATGAAGTTATGGTCCCCTTTGAAGACCCTTTTCCCTTTTCATGTCATCTTTCACCTCTCCATTTTAGAACTTACAATTCTGAAATATTGGATTGGAACTCTAATTTTGGGGCTCAAGATACCATTTTTGACGTTGTTCCTTTGTTTGAGAGTTCCCCAAATGACTCCCTTTTCAACCCCATGGATATTGAACCAATTAACACCTTTACACCAGATGGGGTTGAGATTTGGAGTGAAATGGAAGGTGGGTTTGGAATTGGGGTTGAGGAAGAGCCTCTAGTGATTCAAGGAGGTGGAGAAATTGAAATTAAAAATGAAAATTATAATGGGTTGGAGAGAAAAGGAGGGAGGGGCAAAAGAAAGTGCAAGAGTTCATCAAAAATATTGTCAAGAGAGACAATATCTGAGTATTTCTATATGCCAATTGCTGAGGCTGCAAAAGAATTGAATGTGGGACTCACTCTCTTGAAGAAAAGGTGTAGAGAATTGGGCATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAATGTCAAGGAGATTGAAAGGGGAAATGGAGAGGGAGGGGGGAATGGAATGAAAGTAAAGAATGTATTGGGGATATTAGAGAATGAGAAGAAATTAATGGAGGAAAGACCAGATTTGGATTTAGAGGACAAAACAAAGAGGCTTAGACAAGCTTGCTTTAAGGCTAACTACAAAAAAAGAAAGCTATCAGGAATTATCAATTCCCAATATTTCTCCACTAATGAAGATGAAGAAGATGATGAAGAATTGAAATATCTGTTGTCAGATTGTTCATTTTCGTCCAGTAGCAATAGCTTGTTGCTGTAA 873 38.49 MGENLRPKYEVMVPFEDPFPFSCHLSPLHFRTYNSEILDWNSNFGAQDTIFDVVPLFESSPNDSLFNPMDIEPINTFTPDGVEIWSEMEGGFGIGVEEEPLVIQGGGEIEIKNENYNGLERKGGRGKRKCKSSSKILSRETISEYFYMPIAEAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIERGNGEGGGNGMKVKNVLGILENEKKLMEERPDLDLEDKTKRLRQACFKANYKKRKLSGIINSQYFSTNEDEEDDEELKYLLSDCSFSSSSNSLLL 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1257342 1259447 + Sed0021767.1 Sed08g0215 721991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0215 290 ProSiteProfiles RWP-RK domain profile. 120 205 IPR003035 -
Sed08g0215 290 PANTHER PROTEIN RKD4 126 254 IPR044607 GO:0003700(InterPro)
Sed08g0215 290 Pfam RWP-RK domain 137 184 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0215 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0215 Sed-Chr8:1257342 Sed10g1069 Sed-Chr10:9758527 3.20E-19 dispersed
Sed05g1782 Sed-Chr5:31450602 Sed08g0215 Sed-Chr8:1257342 7.80E-08 transposed
Sed13g0052 Sed-Chr13:326974 Sed08g0215 Sed-Chr8:1257342 1.60E-30 transposed
Sed12g1949 Sed-Chr12:30576783 Sed08g0215 Sed-Chr8:1257342 1.70E-87 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1949 . 118 256 AtRKD Transcription Factor Family AT1G18790 66.9 4.3e-42 169.5
Sed08g0215 . 127 254 AtRKD Transcription Factor Family AT1G18790 65.2 3.8e-38 156.4
Sed08g0215 . 137 287 AtRKD Transcription Factor Family AT1G74480 55.4 1.4e-38 157.9
Sed12g1949 . 132 245 AtRKD Transcription Factor Family AT1G74480 71.1 3.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39255 PF02042 RWP-RK 3.20E-21 No_clan Sed TF