Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0219 ATGCTGGAAATTAAGATTTTCGGCAAGGAGATTCCGCTACTGGTCGACGTTGAAGTTCCGTCGATCCAAACCGATGATTCGGATTCAAGTTATGCTAAAGAAAAGGATGCAGTTTTAGGAAAACCCACCGATAGTTCAGCTGCAAAAGAGGTAACTCTTCATGATTCAGAGGACTCTATGTGTGTACAAACAGCAAGCGAGGTGCACATGAATTCTGAAGTGTTATCGGTAGATGAAAATGATAAGCTCGAAGCAAGCCAAACCAAGAAAGAACAGACTGATGCACCCGAGTCTAAAGAGAAACTGAAGAAACCAGATAAGATACTACCATGTCCCCGCTGCAAGAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTTAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGCAGGTGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAATTCCGCCGCTCACTACCGACACATTACTATCTCAGAGGCTCTTCAAGCTGCACAAATTGATGTTCCCAATGGGGTCAACCACCTTGCATCAACAAGCAATGGTCGAGTCCTCAATTTCAGTGTAAACGCACCTGTATGCGGATCTATGGCTACTGTCCCCAATCCTGCAGAAAGAAAGGTGTTGAATGGAACTAGGAATGAGTTCCAAAGACTCGAAGACCAAGTAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCGTCTTCGGTGACAATGTCAAGTTCAATGGAGGAAGGAGCCAGGCGACACCCGCAAGAACCACAGATGCTGAACATCAATGGTTTTCCTCCTCAAATCCCATATCTTCCTGGTGTTCCTTGGCCTTGTCCATGGAATTCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCACCATATTGGAGCTGTACCATTCCTGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTCCTCCAAATACTGGTCCAAGTTCTTCGGCGCTAGGGAAGCATTCGAGAGACAGTGGCAAACTCCAGGCTGATAACTCTGAGATGGAAAGACCTCCAAAACAGAAAAATGGATCAATTTTGGTTCCTAAAACTTTAAGGATCGATGATCCGAACGAAGCTGCTAAGAGTTCAATATGGGAAACACTTGGCATTAAGAATGATTCAATCAAAGCAGTTGATCTGTGTAAGGTCTTTCAATCAAAGACCAATCAAAAGAGTAACGCTTCTGAAGTGTTGTCTCTAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCGCTTAATTTCCACGAGCGGTCGTGA 1365 44.76 MLEIKIFGKEIPLLVDVEVPSIQTDDSDSSYAKEKDAVLGKPTDSSAAKEVTLHDSEDSMCVQTASEVHMNSEVLSVDENDKLEASQTKKEQTDAPESKEKLKKPDKILPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSAAHYRHITISEALQAAQIDVPNGVNHLASTSNGRVLNFSVNAPVCGSMATVPNPAERKVLNGTRNEFQRLEDQVIKAPCKGGETGDDCSSASSVTMSSSMEEGARRHPQEPQMLNINGFPPQIPYLPGVPWPCPWNSPIPPPAFCPPGVPLSFYPAPYWSCTIPGAWNIPWFTPQPCPPNTGPSSSALGKHSRDSGKLQADNSEMERPPKQKNGSILVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLCKVFQSKTNQKSNASEVLSLVLQANPAALSRSLNFHERS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1278424 1281249 + Sed0023411.1 Sed08g0219 721995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0219 454 MobiDBLite consensus disorder prediction 342 385 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 250 265 - -
Sed08g0219 454 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 MobiDBLite consensus disorder prediction 74 102 - -
Sed08g0219 454 Pfam Dof domain, zinc finger 107 163 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 PANTHER CYCLIC DOF FACTOR 2 3 453 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 MobiDBLite consensus disorder prediction 358 372 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 22 54 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 245 265 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 72 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0219 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0639 Sed-Chr6:6017889 Sed08g0219 Sed-Chr8:1278424 8.30E-95 dispersed
Sed08g0219 Sed-Chr8:1278424 Sed08g1321 Sed-Chr8:27311889 3.50E-97 dispersed
Sed01g2341 Sed-Chr1:17681424 Sed08g0219 Sed-Chr8:1278424 7.60E-91 wgd
Sed12g1955 Sed-Chr12:30601869 Sed08g0219 Sed-Chr8:1278424 1.30E-200 wgd
Sed04g0711 Sed-Chr4:5714826 Sed08g0219 Sed-Chr8:1278424 1.50E-53 wgd
Sed06g1520 Sed-Chr6:39875520 Sed08g0219 Sed-Chr8:1278424 6.00E-31 wgd
Sed08g0219 Sed-Chr8:1278424 Sed08g2074 Sed-Chr8:34946289 1.80E-93 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT1G29160 55.2 3.1e-41 166.0
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT1G29160 54.5 2.6e-40 162.9
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT2G34140 54.7 4.2e-43 172.2
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT2G34140 53.4 6.9e-38 154.8
Sed04g1274 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.4e-39 161.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.1e-39 159.1
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT2G37590 65.7 2.7e-38 157.1
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 55.5 1.5e-36 151.4
Sed08g0219 . 102 453 C2C2-Dof Transcription Factor Family AT3G47500 52.4 8.0e-86 315.5
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 58.3 7.0e-41 166.0
Sed13g1381 . 1 116 C2C2-Dof Transcription Factor Family AT5G02460 58.1 1.0e-39 162.2
Sed13g1380 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 57.2 4.3e-38 156.8
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 64.6 2.8e-37 154.1
Sed05g2954 . 46 122 C2C2-Dof Transcription Factor Family AT5G02460 88.3 1.8e-36 151.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 62.6 2.3e-36 151.0
Sed13g1380 . 27 198 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed13g1381 . 19 190 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed04g1274 . 48 133 C2C2-Dof Transcription Factor Family AT3G55370 76.7 1.7e-36 151.4
Sed08g0300 . 28 302 C2C2-Dof Transcription Factor Family AT5G60850 50.2 8.6e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39256 PF02701 zf-Dof 4.30E-32 No_clan Sed TF