Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0219 ATGCTGGAAATTAAGATTTTCGGCAAGGAGATTCCGCTACTGGTCGACGTTGAAGTTCCGTCGATCCAAACCGATGATTCGGATTCAAGTTATGCTAAAGAAAAGGATGCAGTTTTAGGAAAACCCACCGATAGTTCAGCTGCAAAAGAGGTAACTCTTCATGATTCAGAGGACTCTATGTGTGTACAAACAGCAAGCGAGGTGCACATGAATTCTGAAGTGTTATCGGTAGATGAAAATGATAAGCTCGAAGCAAGCCAAACCAAGAAAGAACAGACTGATGCACCCGAGTCTAAAGAGAAACTGAAGAAACCAGATAAGATACTACCATGTCCCCGCTGCAAGAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTTAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATATTGGACTGCAGGTGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAATTCCGCCGCTCACTACCGACACATTACTATCTCAGAGGCTCTTCAAGCTGCACAAATTGATGTTCCCAATGGGGTCAACCACCTTGCATCAACAAGCAATGGTCGAGTCCTCAATTTCAGTGTAAACGCACCTGTATGCGGATCTATGGCTACTGTCCCCAATCCTGCAGAAAGAAAGGTGTTGAATGGAACTAGGAATGAGTTCCAAAGACTCGAAGACCAAGTAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCGTCTTCGGTGACAATGTCAAGTTCAATGGAGGAAGGAGCCAGGCGACACCCGCAAGAACCACAGATGCTGAACATCAATGGTTTTCCTCCTCAAATCCCATATCTTCCTGGTGTTCCTTGGCCTTGTCCATGGAATTCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCACCATATTGGAGCTGTACCATTCCTGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTCCTCCAAATACTGGTCCAAGTTCTTCGGCGCTAGGGAAGCATTCGAGAGACAGTGGCAAACTCCAGGCTGATAACTCTGAGATGGAAAGACCTCCAAAACAGAAAAATGGATCAATTTTGGTTCCTAAAACTTTAAGGATCGATGATCCGAACGAAGCTGCTAAGAGTTCAATATGGGAAACACTTGGCATTAAGAATGATTCAATCAAAGCAGTTGATCTGTGTAAGGTCTTTCAATCAAAGACCAATCAAAAGAGTAACGCTTCTGAAGTGTTGTCTCTAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCGCTTAATTTCCACGAGCGGTCGTGA 1365 44.76 MLEIKIFGKEIPLLVDVEVPSIQTDDSDSSYAKEKDAVLGKPTDSSAAKEVTLHDSEDSMCVQTASEVHMNSEVLSVDENDKLEASQTKKEQTDAPESKEKLKKPDKILPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSAAHYRHITISEALQAAQIDVPNGVNHLASTSNGRVLNFSVNAPVCGSMATVPNPAERKVLNGTRNEFQRLEDQVIKAPCKGGETGDDCSSASSVTMSSSMEEGARRHPQEPQMLNINGFPPQIPYLPGVPWPCPWNSPIPPPAFCPPGVPLSFYPAPYWSCTIPGAWNIPWFTPQPCPPNTGPSSSALGKHSRDSGKLQADNSEMERPPKQKNGSILVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLCKVFQSKTNQKSNASEVLSLVLQANPAALSRSLNFHERS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1278424 1281249 + Sed0023411.1 Sed08g0219 721995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0219 454 MobiDBLite consensus disorder prediction 342 385 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 250 265 - -
Sed08g0219 454 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 MobiDBLite consensus disorder prediction 74 102 - -
Sed08g0219 454 Pfam Dof domain, zinc finger 107 163 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 PANTHER CYCLIC DOF FACTOR 2 3 453 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0219 454 MobiDBLite consensus disorder prediction 358 372 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 22 54 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 245 265 - -
Sed08g0219 454 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0639 Sed-Chr6:6017889 Sed08g0219 Sed-Chr8:1278424 8.30E-95 dispersed
Sed08g0219 Sed-Chr8:1278424 Sed08g1321 Sed-Chr8:27311889 3.50E-97 dispersed
Sed01g2341 Sed-Chr1:17681424 Sed08g0219 Sed-Chr8:1278424 7.60E-91 wgd
Sed12g1955 Sed-Chr12:30601869 Sed08g0219 Sed-Chr8:1278424 1.30E-200 wgd
Sed04g0711 Sed-Chr4:5714826 Sed08g0219 Sed-Chr8:1278424 1.50E-53 wgd
Sed06g1520 Sed-Chr6:39875520 Sed08g0219 Sed-Chr8:1278424 6.00E-31 wgd
Sed08g0219 Sed-Chr8:1278424 Sed08g2074 Sed-Chr8:34946289 1.80E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39256 PF02701 zf-Dof 4.30E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0219 - - - 0.0