Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0227 ATGGCGTTTCTTGGACTTCTCTTGGTGGGTCTTCTCTGTTTGGGTTTTGACTCTGTTTATGCCAACCATGGAGGTTGGACTGACGCTCACGCCACGTTCTACGGCGGCGGCGACGCTACTGGCACGATGGGTGGGGCTTGTGGTTATGGGAATCTGTATAGCCAAGGGTATGGAACAAACACGGCGGCGTTGAGCACAACCCTTTTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAAGTGTGTAAATGACCCTAAATGGTGTCTTCCGAACTCCGTTGTGGTCACTGCTACTAACTTTTGCCCGCCGAACAATGCTCTCCCCAACAACGCCGGTGGCTGGTGCAACCCTCCACTGCACCATTTTGACCTTTCTCAGCCTGTTTTTCAGCAAATCGCTCAGTTCAAAGCTGGCATTGTCCCTGTGGCTTACAGAAGGGTGTCATGTGAGAAGAAAGGAGGGATAAGATTCACAATAAACGGGCACTCCTATTTCAACTTAGTTCTTGTGACAAACGTTGGAGGAGGAGGGGATGTTCATGGAGTGTGGATCAAAGGGTCCAAAACAGGGTGGGAAGCAATGTCCAGAAACTGGGGCCAGAACTGGCAGAGCAATTCAAATCTCAACGGTCAAGCCCTGTCGTTCAAAGTCATAACCGGCGATGGCCGGACTGTGGTCTCCAACAACGTGGTGCCAGCTGAGTGGAGCTTTGGTCAGACCTTTACTGGGCTGCAGTTCCCATGA 750 51.33 MAFLGLLLVGLLCLGFDSVYANHGGWTDAHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTTLFNNGLSCGACFEIKCVNDPKWCLPNSVVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQFKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSNLNGQALSFKVITGDGRTVVSNNVVPAEWSFGQTFTGLQFP 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1292903 1295178 - Sed0015383.1 Sed08g0227 722003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0227 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Sed08g0227 249 FunFam Expansin 15 152 - -
Sed08g0227 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Sed08g0227 249 CDD DPBB_EXPA_N 25 151 - -
Sed08g0227 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Sed08g0227 249 SUPERFAMILY Barwin-like endoglucanases 12 174 IPR036908 -
Sed08g0227 249 SMART dpbb_1 61 146 IPR007112 -
Sed08g0227 249 Gene3D - 14 152 IPR036908 -
Sed08g0227 249 PANTHER EXPANSIN-A15 19 247 IPR002963 GO:0009664(InterPro)
Sed08g0227 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Sed08g0227 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Sed08g0227 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Sed08g0227 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Sed08g0227 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Sed08g0227 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Sed08g0227 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Sed08g0227 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Sed08g0227 249 Gene3D - 153 248 IPR036749 -
Sed08g0227 249 FunFam Expansin 156 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1937 Sed-Chr7:33891417 Sed08g0227 Sed-Chr8:1292903 4.80E-109 dispersed
Sed08g0227 Sed-Chr8:1292903 Sed11g2112 Sed-Chr11:35050955 8.60E-106 dispersed
Sed08g0227 Sed-Chr8:1292903 Sed08g0228 Sed-Chr8:1292903 1.10E-148 tandem
Sed07g1869 Sed-Chr7:29027593 Sed08g0227 Sed-Chr8:1292903 7.80E-70 transposed
Sed11g2008 Sed-Chr11:34240098 Sed08g0227 Sed-Chr8:1292903 8.40E-101 wgd
Sed06g1515 Sed-Chr6:39836514 Sed08g0227 Sed-Chr8:1292903 8.60E-114 wgd
Sed08g0227 Sed-Chr8:1292903 Sed08g2079 Sed-Chr8:34965760 2.20E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0227 - - - 0.0