Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0228 ATGGGTCTGGAGCACTGGCATTTGTTGGGCCCAAGGAAATATCACGTGGGGCACTTGTTAAGGCAAATGGCGTTTCTTGGACTTCTCTTGGTGGGTCTTCTCTGTTTGGGTTTTGACTCTGTTTATGCCAACCATGGAGGTTGGACTGACGCTCACGCCACGTTCTACGGCGGCGGCGACGCTACTGGCACGATGGGTGGGGCTTGTGGTTATGGGAATCTGTATAGCCAAGGGTATGGAACAAACACGGCGGCGTTGAGCACAACCCTTTTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAAGTGTGTAAATGACCCTAAATGGTGTCTTCCGAACTCCGTTGTGGTCACTGCTACTAACTTTTGCCCGCCGAACAATGCTCTCCCCAACAACGCCGGTGGCTGGTGCAACCCTCCACTGCACCATTTTGACCTTTCTCAGCCTGTTTTTCAGCAAATCGCTCAGTTCAAAGCTGGCATTGTCCCTGTGGCTTACAGAAGGGTGTCATGTGAGAAGAAAGGAGGGATAAGATTCACAATAAACGGGCACTCCTATTTCAACTTAGTTCTTGTGACAAACGTTGGAGGAGGAGGGGATGTTCATGGAGTGTGGATCAAAGGGTCCAAAACAGGGTGGGAAGCAATGTCCAGAAACTGGGGCCAGAACTGGCAGAGCAATTCAAATCTCAACGGTCAAGCCCTGTCGTTCAAAGTCATAACCGGCGATGGCCGGACTGTGGTCTCCAACAACGTGGTGCCAGCTGAGTGGAGCTTTGGTCAGACCTTTACTGGGCTGCAGTTCCCATGA 816 51.35 MGLEHWHLLGPRKYHVGHLLRQMAFLGLLLVGLLCLGFDSVYANHGGWTDAHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTTLFNNGLSCGACFEIKCVNDPKWCLPNSVVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQFKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSNLNGQALSFKVITGDGRTVVSNNVVPAEWSFGQTFTGLQFP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1292903 1296708 - Sed0015383.2 Sed08g0228 722004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0228 271 SMART dpbb_1 83 168 IPR007112 -
Sed08g0228 271 FunFam Expansin 178 270 - -
Sed08g0228 271 FunFam Expansin 37 174 - -
Sed08g0228 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 178 IPR007112 -
Sed08g0228 271 Pfam Expansin C-terminal domain 179 256 IPR007117 -
Sed08g0228 271 Gene3D - 175 270 IPR036749 -
Sed08g0228 271 Gene3D - 36 174 IPR036908 -
Sed08g0228 271 SUPERFAMILY Barwin-like endoglucanases 47 196 IPR036908 -
Sed08g0228 271 PANTHER EXPANSIN-A15 40 269 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 Pfam Lytic transglycolase 83 168 IPR009009 -
Sed08g0228 271 PRINTS Expansin signature 177 189 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 78 92 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 105 116 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 136 153 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 189 210 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 253 269 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 224 245 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 153 166 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 PRINTS Expansin signature 117 127 IPR002963 GO:0009664(InterPro)
Sed08g0228 271 CDD DPBB_EXPA_N 47 173 - -
Sed08g0228 271 SUPERFAMILY PHL pollen allergen 175 267 IPR036749 -
Sed08g0228 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 267 IPR007117 -
Sed08g0228 271 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576(InterPro)
Sed08g0228 271 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576(InterPro)
Sed08g0228 271 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576(InterPro)
Sed08g0228 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576(InterPro)
Sed08g0228 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Sed08g0228 271 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1515 Sed-Chr6:39836514 Sed08g0228 Sed-Chr8:1292903 8.60E-114 dispersed
Sed08g0228 Sed-Chr8:1292903 Sed11g2112 Sed-Chr11:35050955 9.40E-106 dispersed
Sed08g0227 Sed-Chr8:1292903 Sed08g0228 Sed-Chr8:1292903 1.10E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0228 - - - 0.0