Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0233 ATGGCTCCGGCGGAGGTCCGATCGGAGATTGCCTTCTTCGACGTGGAGACCACAGTCCCGACCCGCAAAGGCCAAGGGTTTTCAATTCTGGAGTTCGGAGCCATTCTGGTGTGCCCTAGAAAGCTGGTCGAACTGGAAAGCTATTCCACTCTCGTTCGCCCCTCCAATCTCTCGCTCATTAACTCCTTGTCGGTGCGATGCAATGGCATTACCAGAGACGCCGTCGTTTCTTCCCCTACTTTCTCCCAAATTGCCGATAGGGTTTTCGATCTCCTTCACGGACGGATATGGGCAGGGCATAACATATTGAGATTTGATTGTGCTCGAATAAGGGAGGCTTTTGCGGAAATTGATATGCCAGCCCCGCAACCGAAAGGTACTATTGATTCTTTGGCCTTGTTGACTCAGAAGTTTGGAAGAAGAGCTGGTGACATGAAGATGGCGACTCTTGCTACTTATTTCGGGATAGGACAACAAACTCACAGGAGTTTGGATGATGTCAGGATGAATCTCGAAGTTCTTAAGTATTGTGCAACTGTCTTGTTTCTGGAATCAAGTCTACCCGAAGTTTTTCTGGAGAACAGTTGGGTTTCACCAAATGCCGTTACAAGGTGTCGTGCTGCAAAATCATCTCCACAGGGAGTTAATTCGAATAATAGCCCTCATTCATCAAATTCAAGGACAGGTGGCAATCCAATATCTCTGAAGGATGAACAAGGGGAAGCTCATCCGATATTATCTCTTGTAACTAGCAGCTCCGAGGACGGAACCTCAAATCTGGCCGAATCTGATGCAACTGAATCAGATGCTTTTAACATCCACATTCTCAGTGATCAACTAACAGGAGAATCACTCGAAACAGATACCAGTATGGAAGAACATGTCTCAGTATCTACTGAAGCATCTCACACAGAGGATACTTCCACAAGTCTCAGCGCCCCTACAGAATTCTTGGAGCCAGATCAGGTCTCTGTCCCATCCATCACAGCATCTTTCATTCCATTCTTTCGTGGTAGCCAAAGAATACAATTATCGCACAAAGATGACTGTTTACAGCTTCTTTGTAATAATCTGAAAGTTCGATTTGGCATAAGCACGAAATTCACTGATTACGCTGGGCGTCCAAGGCTGAGTTTTGTGGTCGACGTACCACCGAGTTTATGCAGGGTTCTTGAAGCATCCGATGGCGTGGCTCAGAGATTATTTTCAGAATCTGGCAGCGGCTCCGAGTGGAGGCCTGTCGTGATAAGAAAGAATGGCTATTTCAACTACCCGACAATGAGAATACACATTCCAACTGCAGTAAGTGGAGATATAGCTATTTATGCTACAGAGATGTACCAAAAGGAATCATCAAGTGATGCACAAAGGCTGATATTCAGTCAATTTGATGCTGCAGAGCTTGAAAGCTTGATCAACCCTGGAGTTATCATAGATGCATTCATTTCATTGGATACATATGATTATCAACAGAGTGCAGGCATTAGATTGGTAGCAAAAAAGTTGATCATCCATTCCTCTTAA 1524 45.08 MAPAEVRSEIAFFDVETTVPTRKGQGFSILEFGAILVCPRKLVELESYSTLVRPSNLSLINSLSVRCNGITRDAVVSSPTFSQIADRVFDLLHGRIWAGHNILRFDCARIREAFAEIDMPAPQPKGTIDSLALLTQKFGRRAGDMKMATLATYFGIGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPEVFLENSWVSPNAVTRCRAAKSSPQGVNSNNSPHSSNSRTGGNPISLKDEQGEAHPILSLVTSSSEDGTSNLAESDATESDAFNIHILSDQLTGESLETDTSMEEHVSVSTEASHTEDTSTSLSAPTEFLEPDQVSVPSITASFIPFFRGSQRIQLSHKDDCLQLLCNNLKVRFGISTKFTDYAGRPRLSFVVDVPPSLCRVLEASDGVAQRLFSESGSGSEWRPVVIRKNGYFNYPTMRIHIPTAVSGDIAIYATEMYQKESSSDAQRLIFSQFDAAELESLINPGVIIDAFISLDTYDYQQSAGIRLVAKKLIIHSS 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1335962 1339961 + Sed0016998.1 Sed08g0233 722009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0233 507 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 8 458 - GO:0008408(PANTHER)
Sed08g0233 507 Pfam Exonuclease 12 174 IPR013520 -
Sed08g0233 507 SUPERFAMILY Ribonuclease H-like 9 179 IPR012337 -
Sed08g0233 507 CDD DEDDh 11 175 - -
Sed08g0233 507 MobiDBLite consensus disorder prediction 286 315 - -
Sed08g0233 507 MobiDBLite consensus disorder prediction 208 233 - -
Sed08g0233 507 MobiDBLite consensus disorder prediction 208 237 - -
Sed08g0233 507 FunFam Exonuclease family protein 3 181 - -
Sed08g0233 507 Gene3D - 5 180 IPR036397 GO:0003676(InterPro)
Sed08g0233 507 SMART exoiiiendus 9 183 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0233 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0233 Sed-Chr8:1335962 Sed12g1964 Sed-Chr12:30690693 8.20E-188 dispersed
Sed12g1963 Sed-Chr12:30690693 Sed08g0233 Sed-Chr8:1335962 4.80E-228 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g581 . . Bda06g00537 . . . . . . . Cma10g00204 Cma11g00131 Car10g00193 Car11g00165 Sed08g0233 . Cpe04g01486 Bhi02g00300 Tan09g2098 Cmetu02g0126 . Hepe09g0103 . . Cla06g01577 Cam06g1745 Cec06g1803 Cco06g1805 Clacu06g1711 Cmu06g1655 Cre06g2468 . . . . . . . . . Blo15g00320 . . . . . . . Cmo10g00221 Cmo11g00181 . . . . . Cpe18g00783 . . . . . . . . . . . . . . Lsi06g01450 Csa01g00252 Chy02g02482 Cme02g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005500 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39