Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0239 ATGGCGGGAGATTTTTCTAGGGTTTTATGCCTCTTCCTCTTCCTCTTCCTCTTCATCTCTCTTTCTTCTGCCCTAAAACCCCCATTCGTTCCCTTTTCGCCGCCCGACAGTTACTTAATCAACTGCGGCTCGCCGGAGCAAACCCGTCTCGACGACGGCCGGATCTTCAAATCCGATCGCGATTCGTCTTCTCTCCTCTCCACTGAAGAAGACGTTCAAATCGCAGCCGATTCCGTTCCCTCAAACGCCGCCGTTTCGGCATCGCCTCTTTTTCGCTCCGCTAGGGTTTTCACCGGCGATTCCACTTACACCTTCTTCATTTCTCGGCCCGGCCGCCACTGGATCCGCCTCTACTTTTACCCTCTCCCAAACCCTAATTTCAACCTCTCCGATTCCGTTTTCACCGTCGCAACCGACAGCTTCGTCCTCCTCCACGATTTCTCCGCCAACCCCAAATCCAAATCCAAATCCAAATCCGTCTTCAAGGAGTACCTAATCAACATCACAACCGACCGATTCTCGCTTCGCTTCAAACCGAAGCGAAACTCGTTAGCCTTCGTCAATGCCATCGAACTCGTCTCCGCTCCGGATTCGCTGATTTCCGACTCCGCCGCCTCTGTTTCCCCGGTGAGTTTCTTTAACGGATTGTCAAATTTCGCTCTGGAGATTTGTTACCGTGTTAATGTGGGAGGGCCCGAGATTGTTCCGAAAAACGACACGCTGTCGAGGACTTGGGAAACGGATGATGCTTACAACAAATTCCCTCAGGGTTCTAAGAATGTGTCTGTGAATTTGAACTCTGTTAAGTACTCTGAAAATGGAGTGACTCCGTTGATTGCTCCGAATTCGGTTTATGCGACCGCGGAGGATTTGCAGGACTCGAAAACGATGCAGCCGAGCTTTAATCTGAGTTGGAGTTTTGGTGTGGAGCAGAGCTATTCGTATTTGATTAGGCTCCATTTTTGTGACATTGTGAGCAAAGTTCTTAACAATTTGTACTTCAATGTGTTCATCAATGGGATGATGGGTGTTGCAGATCTTGATCTGTCTCAGCTCACTGGTGATCTTGCAACGCCTTACTATAGGGATTTTGTGCTCAATGCCTCCGATGTCAAGAACAACACCATCTTGATTCAGGTCGGTCCGTCTAATCTCGATTCAGGCCTGCAAGACGCAATCCTCAACGGCATAGAGATCATGAAGATGAGCAACGATGCGCAAAGCTTGGATGGATTGTTTTCGGTGGATGGAAGAAGATACAAGGGGGGCGGCTCAAGATCATGGAGCACCATGAAGATTGTTTGTGTTGTGGGTTTGGGAATGGGAGTGATGGCCATTCTGTTTCTTGGAGCAATGTTGTTGAAATGGCAGAAAAGGCCTCAAGGATGGGAGAAGAAGGACAGTTTCTCTTCATGGCTTCTTCCATTGCAATCAAACTCAGTGAGTTTCTTCTCTACCAAAAGCAGCTCCAGAAAATCAAGCCTTTATGGGTCTCGTAGGAGCAAGACTGGTTTTTCAGGTACCTACACTAATGTGGGCCTTGGTCGCTGCTTCTCTCTCAATGAATTACAGGCAGCGACAGAGAAGTTCAACGAGAAAGCAGTGATCGGAGTGGGCGGATTCGGCAAGGTGTACGCCGGAACCCTAGAAGATGGAAGCAGCGTGGCCGTGAAACGCGGAAACCCTAGCTCCGACCAAGGCATGAACGAGTTCCGAACCGAGATCGAGATGCTGTCGAAGCTCCGCCACCGGCACCTGGTTTCCCTCATCGGCTACTGCGACGAGCAGTCGGAGATGATCCTCGTCTACGAGTACATGTCCAACGGCCCCCTCCGCGACCACCTCTACGCCTCCCCCCTCCCGCCCCTCCCCTGGAAGCAGCGCCTCGAGATCTGCATCGGCGCCGCCCGCGGCCTCCACTACCTCCACACCGGCGCCGCTCAGGGCATCATCCACCGCGACGTCAAGACCACCAACATCCTTCTCGATGAGAATTTTGTCGCCAAAGTGGCCGATTTCGGGCTTTCGAAGGCGGCCCCGTCGCTGGAACAGACTCATGTGAGCACTGCGGTGAAGGGGAGTTTTGGGTACCTCGATCCCGAGTACTTCAGGCGCCAGAAATTGACTGATAAGTCTGATGTTTACTCTTTTGGGGTTCTTCTTTTTGAGGTTCTTTGCGCCAGACAAGTCATTAACCCTACATTGCCAAGGGAACAGGTGAATTTGGCAGAGTGGGCAATGCAGAGTTACAGAAAAGGAAAGCTAGAGAAGATAATTGATCCTCATATTAGTGGCTCAATTGTGGAGGGATCACTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGGGCTGATAGGCCAACCATGGGAGATGTGTTATGGAACTTAGAATATGCTTTGCAGCTACAAGAGGCTGTGTCAGAGCTTGAAGACGGCTCTGAGGAAGACAAATGTGAAGGCCAAGTGGCTTTGGACAAACCAAAACCAAATGAAAATCAACCAAAAGGACAAGCCAGTGCTTCTGTATCAGTATGTGATGATACTTCTGAAGTCTCAGTTAGTGCTCCTCTGTTTCCAGAGATTCGAAATTTTCAGGGAAGATGA 2616 50.15 MAGDFSRVLCLFLFLFLFISLSSALKPPFVPFSPPDSYLINCGSPEQTRLDDGRIFKSDRDSSSLLSTEEDVQIAADSVPSNAAVSASPLFRSARVFTGDSTYTFFISRPGRHWIRLYFYPLPNPNFNLSDSVFTVATDSFVLLHDFSANPKSKSKSKSVFKEYLINITTDRFSLRFKPKRNSLAFVNAIELVSAPDSLISDSAASVSPVSFFNGLSNFALEICYRVNVGGPEIVPKNDTLSRTWETDDAYNKFPQGSKNVSVNLNSVKYSENGVTPLIAPNSVYATAEDLQDSKTMQPSFNLSWSFGVEQSYSYLIRLHFCDIVSKVLNNLYFNVFINGMMGVADLDLSQLTGDLATPYYRDFVLNASDVKNNTILIQVGPSNLDSGLQDAILNGIEIMKMSNDAQSLDGLFSVDGRRYKGGGSRSWSTMKIVCVVGLGMGVMAILFLGAMLLKWQKRPQGWEKKDSFSSWLLPLQSNSVSFFSTKSSSRKSSLYGSRRSKTGFSGTYTNVGLGRCFSLNELQAATEKFNEKAVIGVGGFGKVYAGTLEDGSSVAVKRGNPSSDQGMNEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMSNGPLRDHLYASPLPPLPWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQKLTDKSDVYSFGVLLFEVLCARQVINPTLPREQVNLAEWAMQSYRKGKLEKIIDPHISGSIVEGSLKKFVEAAEKCLAEYGADRPTMGDVLWNLEYALQLQEAVSELEDGSEEDKCEGQVALDKPKPNENQPKGQASASVSVCDDTSEVSVSAPLFPEIRNFQGR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1358785 1365591 + Sed0024406.1 Sed08g0239 722015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0239 871 Pfam Malectin-like domain 40 401 IPR024788 -
Sed08g0239 871 FunFam Receptor-like protein kinase FERONIA 606 821 - -
Sed08g0239 871 Gene3D - 37 196 - -
Sed08g0239 871 Gene3D - 219 405 - -
Sed08g0239 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0239 871 CDD STKc_IRAK 536 801 - -
Sed08g0239 871 FunFam Receptor-like protein kinase FERONIA 220 404 - -
Sed08g0239 871 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524(InterPro)
Sed08g0239 871 MobiDBLite consensus disorder prediction 814 848 - -
Sed08g0239 871 FunFam Putative receptor-like protein kinase 37 196 - -
Sed08g0239 871 PANTHER OS07G0166700 PROTEIN 518 808 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed08g0239 871 FunFam receptor-like protein kinase FERONIA 492 605 - -
Sed08g0239 871 Gene3D Transferase(Phosphotransferase) domain 1 606 825 - -
Sed08g0239 871 ProSiteProfiles Protein kinase domain profile. 530 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0239 871 SMART serkin_6 530 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0239 871 SUPERFAMILY Protein kinase-like (PK-like) 505 801 IPR011009 -
Sed08g0239 871 Gene3D Phosphorylase Kinase; domain 1 498 605 - -
Sed08g0239 871 Pfam Protein tyrosine and serine/threonine kinase 533 793 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3151 Sed-Chr4:42291401 Sed08g0239 Sed-Chr8:1358785 1.30E-233 dispersed
Sed07g1512 Sed-Chr7:11812075 Sed08g0239 Sed-Chr8:1358785 1.60E-252 dispersed
Sed07g2623 Sed-Chr7:41685629 Sed08g0239 Sed-Chr8:1358785 5.40E-229 dispersed
Sed08g0239 Sed-Chr8:1358785 Sed09g1544 Sed-Chr9:38981033 5.50E-248 dispersed
Sed12g1972 Sed-Chr12:30709941 Sed08g0239 Sed-Chr8:1358785 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79581 PF12819 Malectin_like 1.20E-38 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0239 - - - 0.0