Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0239 | ATGGCGGGAGATTTTTCTAGGGTTTTATGCCTCTTCCTCTTCCTCTTCCTCTTCATCTCTCTTTCTTCTGCCCTAAAACCCCCATTCGTTCCCTTTTCGCCGCCCGACAGTTACTTAATCAACTGCGGCTCGCCGGAGCAAACCCGTCTCGACGACGGCCGGATCTTCAAATCCGATCGCGATTCGTCTTCTCTCCTCTCCACTGAAGAAGACGTTCAAATCGCAGCCGATTCCGTTCCCTCAAACGCCGCCGTTTCGGCATCGCCTCTTTTTCGCTCCGCTAGGGTTTTCACCGGCGATTCCACTTACACCTTCTTCATTTCTCGGCCCGGCCGCCACTGGATCCGCCTCTACTTTTACCCTCTCCCAAACCCTAATTTCAACCTCTCCGATTCCGTTTTCACCGTCGCAACCGACAGCTTCGTCCTCCTCCACGATTTCTCCGCCAACCCCAAATCCAAATCCAAATCCAAATCCGTCTTCAAGGAGTACCTAATCAACATCACAACCGACCGATTCTCGCTTCGCTTCAAACCGAAGCGAAACTCGTTAGCCTTCGTCAATGCCATCGAACTCGTCTCCGCTCCGGATTCGCTGATTTCCGACTCCGCCGCCTCTGTTTCCCCGGTGAGTTTCTTTAACGGATTGTCAAATTTCGCTCTGGAGATTTGTTACCGTGTTAATGTGGGAGGGCCCGAGATTGTTCCGAAAAACGACACGCTGTCGAGGACTTGGGAAACGGATGATGCTTACAACAAATTCCCTCAGGGTTCTAAGAATGTGTCTGTGAATTTGAACTCTGTTAAGTACTCTGAAAATGGAGTGACTCCGTTGATTGCTCCGAATTCGGTTTATGCGACCGCGGAGGATTTGCAGGACTCGAAAACGATGCAGCCGAGCTTTAATCTGAGTTGGAGTTTTGGTGTGGAGCAGAGCTATTCGTATTTGATTAGGCTCCATTTTTGTGACATTGTGAGCAAAGTTCTTAACAATTTGTACTTCAATGTGTTCATCAATGGGATGATGGGTGTTGCAGATCTTGATCTGTCTCAGCTCACTGGTGATCTTGCAACGCCTTACTATAGGGATTTTGTGCTCAATGCCTCCGATGTCAAGAACAACACCATCTTGATTCAGGTCGGTCCGTCTAATCTCGATTCAGGCCTGCAAGACGCAATCCTCAACGGCATAGAGATCATGAAGATGAGCAACGATGCGCAAAGCTTGGATGGATTGTTTTCGGTGGATGGAAGAAGATACAAGGGGGGCGGCTCAAGATCATGGAGCACCATGAAGATTGTTTGTGTTGTGGGTTTGGGAATGGGAGTGATGGCCATTCTGTTTCTTGGAGCAATGTTGTTGAAATGGCAGAAAAGGCCTCAAGGATGGGAGAAGAAGGACAGTTTCTCTTCATGGCTTCTTCCATTGCAATCAAACTCAGTGAGTTTCTTCTCTACCAAAAGCAGCTCCAGAAAATCAAGCCTTTATGGGTCTCGTAGGAGCAAGACTGGTTTTTCAGGTACCTACACTAATGTGGGCCTTGGTCGCTGCTTCTCTCTCAATGAATTACAGGCAGCGACAGAGAAGTTCAACGAGAAAGCAGTGATCGGAGTGGGCGGATTCGGCAAGGTGTACGCCGGAACCCTAGAAGATGGAAGCAGCGTGGCCGTGAAACGCGGAAACCCTAGCTCCGACCAAGGCATGAACGAGTTCCGAACCGAGATCGAGATGCTGTCGAAGCTCCGCCACCGGCACCTGGTTTCCCTCATCGGCTACTGCGACGAGCAGTCGGAGATGATCCTCGTCTACGAGTACATGTCCAACGGCCCCCTCCGCGACCACCTCTACGCCTCCCCCCTCCCGCCCCTCCCCTGGAAGCAGCGCCTCGAGATCTGCATCGGCGCCGCCCGCGGCCTCCACTACCTCCACACCGGCGCCGCTCAGGGCATCATCCACCGCGACGTCAAGACCACCAACATCCTTCTCGATGAGAATTTTGTCGCCAAAGTGGCCGATTTCGGGCTTTCGAAGGCGGCCCCGTCGCTGGAACAGACTCATGTGAGCACTGCGGTGAAGGGGAGTTTTGGGTACCTCGATCCCGAGTACTTCAGGCGCCAGAAATTGACTGATAAGTCTGATGTTTACTCTTTTGGGGTTCTTCTTTTTGAGGTTCTTTGCGCCAGACAAGTCATTAACCCTACATTGCCAAGGGAACAGGTGAATTTGGCAGAGTGGGCAATGCAGAGTTACAGAAAAGGAAAGCTAGAGAAGATAATTGATCCTCATATTAGTGGCTCAATTGTGGAGGGATCACTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGGGCTGATAGGCCAACCATGGGAGATGTGTTATGGAACTTAGAATATGCTTTGCAGCTACAAGAGGCTGTGTCAGAGCTTGAAGACGGCTCTGAGGAAGACAAATGTGAAGGCCAAGTGGCTTTGGACAAACCAAAACCAAATGAAAATCAACCAAAAGGACAAGCCAGTGCTTCTGTATCAGTATGTGATGATACTTCTGAAGTCTCAGTTAGTGCTCCTCTGTTTCCAGAGATTCGAAATTTTCAGGGAAGATGA | 2616 | 50.15 | MAGDFSRVLCLFLFLFLFISLSSALKPPFVPFSPPDSYLINCGSPEQTRLDDGRIFKSDRDSSSLLSTEEDVQIAADSVPSNAAVSASPLFRSARVFTGDSTYTFFISRPGRHWIRLYFYPLPNPNFNLSDSVFTVATDSFVLLHDFSANPKSKSKSKSVFKEYLINITTDRFSLRFKPKRNSLAFVNAIELVSAPDSLISDSAASVSPVSFFNGLSNFALEICYRVNVGGPEIVPKNDTLSRTWETDDAYNKFPQGSKNVSVNLNSVKYSENGVTPLIAPNSVYATAEDLQDSKTMQPSFNLSWSFGVEQSYSYLIRLHFCDIVSKVLNNLYFNVFINGMMGVADLDLSQLTGDLATPYYRDFVLNASDVKNNTILIQVGPSNLDSGLQDAILNGIEIMKMSNDAQSLDGLFSVDGRRYKGGGSRSWSTMKIVCVVGLGMGVMAILFLGAMLLKWQKRPQGWEKKDSFSSWLLPLQSNSVSFFSTKSSSRKSSLYGSRRSKTGFSGTYTNVGLGRCFSLNELQAATEKFNEKAVIGVGGFGKVYAGTLEDGSSVAVKRGNPSSDQGMNEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMSNGPLRDHLYASPLPPLPWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQKLTDKSDVYSFGVLLFEVLCARQVINPTLPREQVNLAEWAMQSYRKGKLEKIIDPHISGSIVEGSLKKFVEAAEKCLAEYGADRPTMGDVLWNLEYALQLQEAVSELEDGSEEDKCEGQVALDKPKPNENQPKGQASASVSVCDDTSEVSVSAPLFPEIRNFQGR | 871 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1358785 | 1365591 | + | Sed0024406.1 | Sed08g0239 | 722015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0239 | 871 | Pfam | Malectin-like domain | 40 | 401 | IPR024788 | - | |
Sed08g0239 | 871 | FunFam | Receptor-like protein kinase FERONIA | 606 | 821 | - | - | |
Sed08g0239 | 871 | Gene3D | - | 37 | 196 | - | - | |
Sed08g0239 | 871 | Gene3D | - | 219 | 405 | - | - | |
Sed08g0239 | 871 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 650 | 662 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0239 | 871 | CDD | STKc_IRAK | 536 | 801 | - | - | |
Sed08g0239 | 871 | FunFam | Receptor-like protein kinase FERONIA | 220 | 404 | - | - | |
Sed08g0239 | 871 | ProSitePatterns | Protein kinases ATP-binding region signature. | 536 | 558 | IPR017441 | GO:0005524(InterPro) | |
Sed08g0239 | 871 | MobiDBLite | consensus disorder prediction | 814 | 848 | - | - | |
Sed08g0239 | 871 | FunFam | Putative receptor-like protein kinase | 37 | 196 | - | - | |
Sed08g0239 | 871 | PANTHER | OS07G0166700 PROTEIN | 518 | 808 | IPR045272 | GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER) | |
Sed08g0239 | 871 | FunFam | receptor-like protein kinase FERONIA | 492 | 605 | - | - | |
Sed08g0239 | 871 | Gene3D | Transferase(Phosphotransferase) domain 1 | 606 | 825 | - | - | |
Sed08g0239 | 871 | ProSiteProfiles | Protein kinase domain profile. | 530 | 803 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0239 | 871 | SMART | serkin_6 | 530 | 803 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0239 | 871 | SUPERFAMILY | Protein kinase-like (PK-like) | 505 | 801 | IPR011009 | - | |
Sed08g0239 | 871 | Gene3D | Phosphorylase Kinase; domain 1 | 498 | 605 | - | - | |
Sed08g0239 | 871 | Pfam | Protein tyrosine and serine/threonine kinase | 533 | 793 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3151 | Sed-Chr4:42291401 | Sed08g0239 | Sed-Chr8:1358785 | 1.30E-233 | dispersed | |
Sed07g1512 | Sed-Chr7:11812075 | Sed08g0239 | Sed-Chr8:1358785 | 1.60E-252 | dispersed | |
Sed07g2623 | Sed-Chr7:41685629 | Sed08g0239 | Sed-Chr8:1358785 | 5.40E-229 | dispersed | |
Sed08g0239 | Sed-Chr8:1358785 | Sed09g1544 | Sed-Chr9:38981033 | 5.50E-248 | dispersed | |
Sed12g1972 | Sed-Chr12:30709941 | Sed08g0239 | Sed-Chr8:1358785 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79581 | PF12819 | Malectin_like | 1.20E-38 | CL0202 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0239 | - | - | - | 0.0 |