Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0241 ATGGCGCTGTTCAGACGATTGTTTTACAGGAAACCGCCGGATCGGATTCTTGAGATCTCCGAGAGAGTCTACGTGTTTGATTGTTGCTTCTCAACGGAAGTGTTGGAAGACGAAGAATATAAAGTCTACTTGGATGGGATTGTAGCAGAGTTACAGAGTTACTTTCCTGATTCTTCTTTCATGGTTTGTAACTTCAGAGAAGGTGGCAGGCGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTTGGCAATATGAGGGATGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGTTCAAGTGAAAGCTGGTTGTCGCTGGAGGGCCAACAGAATGTGCTATTGATGCACTGTGAGAGAGGAGGTTGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGCTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAGCTTCTTCATCTCTTATCTTCTTTAAACCCTCAGCCTTCCCAGCTGAGATATCTTCAGTACATTTCCAGGAGAAAAGTAGGTTCTGATTGGCCTCCACCAGATACTCCTCTAGTTTTGGATTGTTTAATACTCAGAGTTCTACCTCTTTTTGACGGGGGGAAAGGATGTAGGCCTGTTGTGCGTGTCTATGGTCAAGACCCCTCAACACCGGCCAATAGAACTTCAAAGCTTTTGTTTTCAACATCAATCAAGAGAAAACATATCCGCAACTACCTGCAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCACGTTCAAGGGGATGTAATTCTTGAATGCATCCATTTGGATGAAGATCTGGTACATGAGGAGATGATGTTTAGAGTCATGTTTCACACAACATATGTTAGATCAAACATTATGATGCTGGACCGTGATGAAGTTGATGTTTTATGGGATGCAAGGGACCAGTTTCCTAAGGATTTCAGAGTTGAGGCTCTTTTTTTGGATGCTGATGCCGTTGTCCCCAATCTCAACCCGGCCTTCGATGATGAAGATGAAAATGATACTGGAGCTGCTTCTCCTGAAGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGTAATGGATGGGCCGGAAGCAAAGGGGTCCAATTATCCTCAAGTGGTCAATCGTGTAGACCATAAAGGAGATTGGAAGGAGGACTTTGATCCTCCTGCATTCCAAGATTGTGCATCTGATGATGGAAATCCTAAGCATGATAAGAAATTAGATTTTGATGCAGTGAAGGACATTACTGTGGATGATGTGAAGTACAAGCTGGATGAAAATATATATTCTGATCTTAATGTAGTTAAGGACATTGCTGTTGACGATGGGGATATGAACACAAATTCCTTCTTGGTTGCTGCTAATGTCCTGACTCATGTGAAAGCCCATGGGTTGGTAGATGATGCATACGAGAAAATTGAAGATGCAGAAGAAAAGGATGATGGAAGAGATTTTGCACTTGAGAAATTGGAAAACAAGATTCTGCAGAAAAAGTCGAATGCTGATGGTTCTAGACTAAAATCTGAAAAATTGCAAAAACCAATACCCAAGAAACAGTCCATTTCAAGTGGAAAACCAACCACTGATACGAGTTTAGCCAAACAGAAAGTCAAACAACAAGAGACTCAAGGTTTTTCTGCAAAACAAGCAAAGGCTAATGCAATTTCTAGGTGGATTCCTCCTAACAAAGGCTCCTATACAAATTCTATGCATGTTTACTATCCACCTTCAAGATATAACAGTTCCCCCGCTGCTTTGGCAAGTATTGCATCATCAAAGGATATAAATGCAAATTCCAAAACAAAGGCTGCTGCCACCCTTGATTCTCTGGTTGCTACAGATGTATTAATTGAACGAAAAAATTATGAAGTGGTTTCTGCAAGGTCTTCATACTCTGCACCTGGGGAACTCATGCTTGCTCCTCCATCTTCACTTGAGTCAATTGAGGAAACATATTCTTCCTCTGAAACTTCAAAACCATCACATAGTGATCCACAACTTGAAGTAACCCCTGTCCCTCTGTCCACAAAGCCTCCATCTCCACATTTATCATCACTGGCTGGGGAAAGTGGAAAACCTCCTCCAGCTCCTCTACCACCCCCTTCATTGCGCCATATGGAGTCAACATACTCTGCTCCACCACTTTCTGTGTCTTTATCACCATCACCCATAGTTAGCACATCAAAGACAGTGACTCCCCCTCCCCCTCCCCCTCCATTCAGTAGGCAGAATCGTGAGATGCTTTTGCCCCATTCTTCTGCGCAACAATCATGGGAGAAAATATATCCTCCCGTTTCTACTGTAATGGTGGCGGATTCTATACCTCCACCACCCCCACCTCCTCCTCCCTCTATGGTCGTGCCATCTACATTGAAGCATATTGTAAGTGCTCCACCTGTACAGGTTTTATCTCTTCCTTTAGCCCTTCTTTCCTCATCACATAAAGGTACTGGTACATCGCTCTCACCATCCCCACCTCCCCCTCCTATGATGCATGAAGCAATTGTTCCACCATCTTCCCCACACCTGCCTGCTCCAAGATACTGTGGTAGAGTGCCACCACCTCCACCGCCTCCACCACCCTCACCTATTACTTTAGTTACTTCATTTTGTAGTGCTTTCCCGCTCTCACCCCCATTTTTGCATAAAGAATTTTCTTCACAATCTCTAGTGAAAGGAACACCACCCCCGCCACCTTCACCCCCATCCATGCACCGTGTTTCTTCAACACTATCTTCATTACATGGAGCACCACCTCCACCACCATCAAAACATGGAGTACAACCGGTGCCACCTCCTCCCCCTCCACCTCCCATGTATGGAGTACCTCCCTTTCGGATGCCTAATGCACCCTCTCTTTTGATACACGAGGGGTCACCACCTTCTCCACCAATTCCAATGCATGAGGCTTCTCCACCACACCCACCTTCATCAATGAATGTGGCTCCTCCACCACCACCATTACCACCGCCACTTATGCATGGGGTTGCTTCTTCACTACCACCTTCATTACGTGTTTCTCCTCCACCGCCACCACCACCGCCATTGCCGCCTCCTCCTATGCATGTGAACCCTCCATTGCCACCATCGCTTCCACCTATGCTTAGGAATCCTCCTCCACCACCACCACCACCATCCCCTCCACCAAGGTATGAGAATCCTCCATTGCCACCATCGATGCATGATAAATCTCCACCACCTCCACCTTCTCCAATGTGGGGGGCTCCTCCCCCACCACCACCTCCTCCGATGCATGGGGCTCTTCCCTCATCGCCACCTCCTCCTCCAATGCGTGGGGCTCCTCCCCCACCACCACCTCCTTCAATACATGGGGTTCCTCCTCCACCGCCACCTCTCATGCATGACACTTCTCCCTCACCACCACCCCCATTTCATGGGGCCCCACCCCCACCTCCTCAACCTGCTGGTGGTAGAGCCCCTCCACCTCCTCCCTCACCCAATGGTGGTAAATCCCCTCCCCCACCTCCCCCACCCGGTGGTGATAGAGCCCCTCCCCCACCTCCCCCACCCGGTGGTGGTAGAGCCCCTCCACCACCTCCCCCACCGGGTGGTGGCGGAGCTCCAGCACCCCCTCCTCCTCCAGGAGGTAGTGCTCTAGCCCCGCCTAGATCTTCAGGTGGTGGACCTCCTCCACCTCCACCATTAGGTGCAAAAGGAGCTAATGTTGCACCTCCTGACCCAAGAGGTTTATCGGCTGGAAGGGGGCGTGGGCGCTCAACTGCTACAGCCCCTCGAAGGTCTTCTTTAAAGCCTCTACATTGGAGCAAAGTTTCAAGGGCTCTTCAAGGGAGCTTATGGGAAGAACTCCAGAGATATGGCGAGCCTCAAAGTGCACCAGAGTTTGATGTGTCAGAGATAGAGACTCTCTTTTCTGCAAATGTTCCCAAGCCTGCTGATGGTAAATCTGGAGGGCGAAAAAAGTCTGCTGGATCCAAAACTGACAAAGTTCAACTGATTGACCTCAGGAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCTATGGACGAAACAGTATTAGATGTTGATCAGGTGGAAAATCTTATAAAGTTTTGTCCTACGAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATAAGAATAGCCTGGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCAAAGATGAGAGTGTTTTCTTTTAAGATTCAGTTTGGCTCTCAGATATCAGAATTTAAGAGGAGTTTAAATACTGTCTACTCAGCATGTGATGGGGTTAGAAACTCTGCCAAACTGAAGGAGATTATGAAAAAAATTCTATATCTGGGGAATACACTGAATCAAGGAACAGCCAGGGGTTCTGCAGTTGGCTTCAAGTTGGACAGTCTTTCAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACGCTCATGCATTATCTTTGCAAGGTCCTTGCTTCAAAGACACCAGCTCTTCTTGATTTTCATTTGGACCTGGGTAGCCTAGAGGCAGCAACCAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGATTAGAAAAGGTCAAGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAATTTTTCGCAAGACCCTGAAAGAATTCATTGCTAGTGCTGAGACAGAGGTGGCAACGGTGACAAACCTATACTCTGTTGTGGGTAGAAATGCAGATGCACTTGCATTATATTTTGGCGAGGACCCGGCCCGTTGTCCATTTGAGCAGGTTACAGTGACATTATTGAACTTCGTGAAATTATTTTTGAAAGCCCATGATGAGAACTGCAAACAGGCCGAAATGGAAAAGAAAAAAGCCGGTAAGGAGGCTGAAATGGAGAATGCCAAAGGATAA 5001 46.55 MALFRRLFYRKPPDRILEISERVYVFDCCFSTEVLEDEEYKVYLDGIVAELQSYFPDSSFMVCNFREGGRRSQISDVLTQYDMTVMDYPWQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSSLNPQPSQLRYLQYISRRKVGSDWPPPDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSTPANRTSKLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVILECIHLDEDLVHEEMMFRVMFHTTYVRSNIMMLDRDEVDVLWDARDQFPKDFRVEALFLDADAVVPNLNPAFDDEDENDTGAASPEEFFEVEEIFSNVMDGPEAKGSNYPQVVNRVDHKGDWKEDFDPPAFQDCASDDGNPKHDKKLDFDAVKDITVDDVKYKLDENIYSDLNVVKDIAVDDGDMNTNSFLVAANVLTHVKAHGLVDDAYEKIEDAEEKDDGRDFALEKLENKILQKKSNADGSRLKSEKLQKPIPKKQSISSGKPTTDTSLAKQKVKQQETQGFSAKQAKANAISRWIPPNKGSYTNSMHVYYPPSRYNSSPAALASIASSKDINANSKTKAAATLDSLVATDVLIERKNYEVVSARSSYSAPGELMLAPPSSLESIEETYSSSETSKPSHSDPQLEVTPVPLSTKPPSPHLSSLAGESGKPPPAPLPPPSLRHMESTYSAPPLSVSLSPSPIVSTSKTVTPPPPPPPFSRQNREMLLPHSSAQQSWEKIYPPVSTVMVADSIPPPPPPPPPSMVVPSTLKHIVSAPPVQVLSLPLALLSSSHKGTGTSLSPSPPPPPMMHEAIVPPSSPHLPAPRYCGRVPPPPPPPPPSPITLVTSFCSAFPLSPPFLHKEFSSQSLVKGTPPPPPSPPSMHRVSSTLSSLHGAPPPPPSKHGVQPVPPPPPPPPMYGVPPFRMPNAPSLLIHEGSPPSPPIPMHEASPPHPPSSMNVAPPPPPLPPPLMHGVASSLPPSLRVSPPPPPPPPLPPPPMHVNPPLPPSLPPMLRNPPPPPPPPSPPPRYENPPLPPSMHDKSPPPPPSPMWGAPPPPPPPPMHGALPSSPPPPPMRGAPPPPPPPSIHGVPPPPPPLMHDTSPSPPPPFHGAPPPPPQPAGGRAPPPPPSPNGGKSPPPPPPPGGDRAPPPPPPPGGGRAPPPPPPPGGGGAPAPPPPPGGSALAPPRSSGGGPPPPPPLGAKGANVAPPDPRGLSAGRGRGRSTATAPRRSSLKPLHWSKVSRALQGSLWEELQRYGEPQSAPEFDVSEIETLFSANVPKPADGKSGGRKKSAGSKTDKVQLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDETVLDVDQVENLIKFCPTKEEMELLKGYTGDKNSLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQISEFKRSLNTVYSACDGVRNSAKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLSKLADTRASNNKMTLMHYLCKVLASKTPALLDFHLDLGSLEAATKIQLKSLAEEMQAIIKGLEKVKQELVASESDGPVSEIFRKTLKEFIASAETEVATVTNLYSVVGRNADALALYFGEDPARCPFEQVTVTLLNFVKLFLKAHDENCKQAEMEKKKAGKEAEMENAKG 1666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1371158 1385374 - Sed0009694.1 Sed08g0241 722017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0241 1666 Gene3D Formin, FH2 domain 1263 1649 IPR042201 -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 839 882 - -
Sed08g0241 1666 Coils Coil 1638 1665 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 904 1275 - -
Sed08g0241 1666 Coils Coil 1544 1568 - -
Sed08g0241 1666 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Sed08g0241 1666 Coils Coil 505 525 - -
Sed08g0241 1666 Gene3D Protein tyrosine phosphatase superfamily 15 204 IPR029021 -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 516 532 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 1317 1339 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 746 761 - -
Sed08g0241 1666 Gene3D - 205 336 - -
Sed08g0241 1666 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1264 1663 IPR015425 -
Sed08g0241 1666 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 830 882 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 933 963 - -
Sed08g0241 1666 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 646 763 - -
Sed08g0241 1666 PANTHER FORMIN-J 1165 1663 IPR051144 -
Sed08g0241 1666 SMART it6_source 793 1666 IPR015425 -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 664 688 - -
Sed08g0241 1666 SMART PTEN_C2_2 198 338 IPR014020 -
Sed08g0241 1666 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 188 IPR029021 -
Sed08g0241 1666 Pfam Formin Homology 2 Domain 1269 1637 IPR015425 -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 975 1014 - -
Sed08g0241 1666 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1339 1664 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 516 564 - -
Sed08g0241 1666 FunFam Formin-like protein 1264 1649 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 1021 1245 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 1325 1339 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 727 745 - -
Sed08g0241 1666 MobiDBLite consensus disorder prediction 533 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0241 Sed-Chr8:1371158 Sed12g1975 Sed-Chr12:30723772 0.00E+00 dispersed
Sed13g1968 Sed-Chr13:24532389 Sed08g0241 Sed-Chr8:1371158 1.00E-248 transposed
Sed01g2329 Sed-Chr1:17594475 Sed08g0241 Sed-Chr8:1371158 0.00E+00 wgd
Sed12g1974 Sed-Chr12:30723772 Sed08g0241 Sed-Chr8:1371158 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0241 K28090 - csv:101215105 1200.27