Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g0261 | ATGGACGAGATTTCCCTCATCGTAGCCGCCGCCGTAACCTTAGCCTCCGCCGTCCTCCTCCACCGCTTCTTTTTCCGCCGCCGTAGATTCCGATCGGATCTCCCCCTCCCGCCGGGCCCAAAGCCATGGCCGATCGTCGGAAACTTGCCTCAACTCGGGGGAGCGCCGCTCCACTCTCACCTCGCCGCCATGTCCGGCGAGTACGGACCTCTAATGTACCTCCGATTCGGCTCCGTCGACGTCGTCGTGGCGGCTTCCGCGGCGGTGGCGGAGCAGTTCTTGAAGATTCGCGATACTAATTTCCTGAGCCGGCCGCCCAACGCCGGCGCTAAATATATTGCTTATAATTATCAGGACATGGTTTTTGCGCCTTACGGTCCACGGTGGCGGTTGCTCCGGAAGATCAGCGCCGTCCATCTGTTCTCCTCAAAAGCCCTTGATGATCAACGGCTCGTACGTGAGGAAGAGATGGCACTGCTAGTACATGCGCTAGCTAGGGCTGGTGAAGCGCCAACGAGCTTGGGGGGATTGCTTACGGTGTGCACTACGAACGCCTTAGGTCGTATGATGATCGGGCGACGTGTTTTCAATGACGGAAGCAGCGGTGTCGATCCAAAAGCAGACCAGTTTAAGGCGATGACGGAGCAAGTGATGGTGCTGTCTGGAAAGTTTAACCCTGGGGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGAACAGCGTCACTGGCGAGATGAAGAAGGTCCATAAATGGTTCGATGATTTCTTGTCGGAGATCGTGGTGGAACACCAGAGATTATTGGCCAGCGGCAGCAACGATGGCGGCGAGCACCGTGACTTGTTGAGCACGCTTCTATGGTCGAGGGATCAGGCTGAAGATGAGAATGAGAAGCTTAATGACACTGAAATTAAGGCTTTGTTGTTGAACATGTTTACTGCTGGTACCGACACGTCAGCAAGTACGGTGGAATGGGCTTTGGCAGAGCTCATTAGACACCCCGAAGTGATGGCCCAAGCCCAACAAGAACTCGACTTCGTAGTGGGCCGCGATCGGGCAGTTTCGGATCTAGACTTACCACAACTAAACTATCTTCAGGCTGTGGTTAAGGAAACATTTCGACTCCACCCACCGACGCCGCTGTCCCTCCCCCGCATCGCTGCCGATAGCGTCGACATCGCCGGTTATCACATCCCGAAGGGCTCAACTCTGTTGGTCGACGTATGGGCCATCAGTCGTGACCCGAAGGAATGGGCAGACCCACTCCAGTTTAGGCCTAATAGATTCCTTTCGGGTGGCGAGAAGGCCGATGTTGATGTGAAGGGCAATGACTTTGAGATAATCCCCTTTGGTGCTGGGCGAAGAATCTGCCCGGGGATGAGTATGGGCTTAAGGATGGTGCAAATGTTAACGGCTACATTGGTCCATTCCTTTAATTGGGCCTTACCTAATGGGCTTCAGCCTGATAAGTTGAACATGGATGAGGCCTTTGGGCTGACTCTGCGTCGGGCCCAACCTTTGGTTGTTCATCCTCGGCCCAGATTATTGTAG | 1548 | 54.59 | MDEISLIVAAAVTLASAVLLHRFFFRRRRFRSDLPLPPGPKPWPIVGNLPQLGGAPLHSHLAAMSGEYGPLMYLRFGSVDVVVAASAAVAEQFLKIRDTNFLSRPPNAGAKYIAYNYQDMVFAPYGPRWRLLRKISAVHLFSSKALDDQRLVREEEMALLVHALARAGEAPTSLGGLLTVCTTNALGRMMIGRRVFNDGSSGVDPKADQFKAMTEQVMVLSGKFNPGDFFPSLEWLDLNSVTGEMKKVHKWFDDFLSEIVVEHQRLLASGSNDGGEHRDLLSTLLWSRDQAEDENEKLNDTEIKALLLNMFTAGTDTSASTVEWALAELIRHPEVMAQAQQELDFVVGRDRAVSDLDLPQLNYLQAVVKETFRLHPPTPLSLPRIAADSVDIAGYHIPKGSTLLVDVWAISRDPKEWADPLQFRPNRFLSGGEKADVDVKGNDFEIIPFGAGRRICPGMSMGLRMVQMLTATLVHSFNWALPNGLQPDKLNMDEAFGLTLRRAQPLVVHPRPRLL | 515 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1528639 | 1533461 | + | Sed0023861.1 | Sed08g0261 | 722037 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 302 | 319 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 65 | 84 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 365 | 383 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 322 | 348 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | E-class P450 group I signature | 406 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed08g0261 | 515 | PANTHER | CYTOCHROME P450 98A9 | 5 | 514 | - | - | |
| Sed08g0261 | 515 | FunFam | Cytochrome P-450 19 | 26 | 511 | - | - | |
| Sed08g0261 | 515 | Pfam | Cytochrome P450 | 37 | 499 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | P450 superfamily signature | 313 | 330 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | Coils | Coil | 281 | 301 | - | - | |
| Sed08g0261 | 515 | SUPERFAMILY | Cytochrome P450 | 37 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0261 | 515 | Gene3D | Cytochrome P450 | 30 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0261 | Sed-Chr8:1528639 | Sed08g0264 | Sed-Chr8:1559361 | 5.70E-245 | dispersed | |
| Sed08g0261 | Sed-Chr8:1528639 | Sed08g0262 | Sed-Chr8:1543686 | 2.10E-154 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g0261 | K05280 | - | csv:101207160 | 794.267 |