Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g0262 | ATGGTGCATGCGCTTGCAACGGCCAACGAAGGACCGACGATGCTGATGAACTTGCTGACCATGTGCCTTGTAAACAGTCTCGGTCGAACGATGTTCGGGCGACAGGTTTTCGACACCAACGACCCGAAGGTGGAACGGTTTAAGGTGATGGTTGAGCGAATCATGGTGTTGTCCACGACGTTCAACCCGGGCGACTTTTTTCCGTTGCTGGAGTGGCTTGATTTGAACGGTGTTATGGGAGAGATGAAGAAAGTCCATAAATGGTTCGACGATTTCTTGTCGGAGATCGTGGTGGAGCACGAGAGATTATTGGCCCGTGGCGGCGGTGACGACGATTACCGTGACCTGTTGAGCACGCTCCTATGGTCTAGGGATCGGACTGAAGATGAGAATGAGAAGATTACTGACACTGAGATTAAGGCTGTGCTGTTGAATATGTTTGCAGCTGGGACTGACACATCAATGATCGCAGTGGAATGGGCCATGGCAGAGCTCATAAGACACCCGAAACTGATGGCCGAGGCCCAACAAGAACTAGACACCATTGTGGGTCGTGATCGGTTGGTTTCTGAATCAGACCTACCGAAACTAAGCTATCTCCAGGCAGTGGTAAAGGAAACATTACGACTTCACCCCTCGACACCACTCTCCCTCCCCCGCATCGCTGCCGAGAGCTGCGAAATCGACGGCTACCACATTCCTAAGGGCTCCACTCTATTGGTTAGCATTTGGGCCATTGGTCGTGACCCAAAGGAATGGGCCGACCCACTCGAATTCAGGCCCAATAGGTTCCTCCCCGGCGGTAATAAGGACCACATTGATGTGATGGGAAATAATTTTGAGGTGATTCCGTTTGGGGCTGGGCGAAGGATCTGCGCAGGCGTGGGTTTGGGCTTGAGGATGGTCCAGATGTTAACTGCCACGTTGGTCCATTCTTTTGATTGGGCCTTGCCTAATGGGCATGAGCCCAATATGTTAAACATGGACGAGTCATTTGGGCTGGCCATGCGTCGGGCCCAGCCGTTGGTCGTTCATCCTCGACCCAGATTATCGTCTAGAGTTTATCAAGGGTTGTCTTAG | 1080 | 52.04 | MVHALATANEGPTMLMNLLTMCLVNSLGRTMFGRQVFDTNDPKVERFKVMVERIMVLSTTFNPGDFFPLLEWLDLNGVMGEMKKVHKWFDDFLSEIVVEHERLLARGGGDDDYRDLLSTLLWSRDRTEDENEKITDTEIKAVLLNMFAAGTDTSMIAVEWAMAELIRHPKLMAEAQQELDTIVGRDRLVSESDLPKLSYLQAVVKETLRLHPSTPLSLPRIAAESCEIDGYHIPKGSTLLVSIWAIGRDPKEWADPLEFRPNRFLPGGNKDHIDVMGNNFEVIPFGAGRRICAGVGLGLRMVQMLTATLVHSFDWALPNGHEPNMLNMDESFGLAMRRAQPLVVHPRPRLSSRVYQGLS | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1543686 | 1546367 | + | Sed0004035.1 | Sed08g0262 | 722038 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g0262 | 359 | FunFam | Putative cytochrome P450 superfamily protein | 140 | 348 | - | - | |
| Sed08g0262 | 359 | PANTHER | CYTOCHROME P450 98A9 | 2 | 356 | - | - | |
| Sed08g0262 | 359 | PRINTS | P450 superfamily signature | 149 | 166 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | P450 superfamily signature | 202 | 213 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | P450 superfamily signature | 283 | 292 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 285 | 294 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed08g0262 | 359 | Gene3D | Cytochrome P450 | 1 | 353 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | SUPERFAMILY | Cytochrome P450 | 2 | 349 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | Pfam | Cytochrome P450 | 4 | 336 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | E-class P450 group I signature | 138 | 155 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | E-class P450 group I signature | 282 | 292 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | E-class P450 group I signature | 158 | 184 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | E-class P450 group I signature | 292 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0262 | 359 | PRINTS | E-class P450 group I signature | 242 | 266 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0262 | Sed-Chr8:1543686 | Sed08g0264 | Sed-Chr8:1559361 | 4.50E-172 | dispersed | |
| Sed08g0261 | Sed-Chr8:1528639 | Sed08g0262 | Sed-Chr8:1543686 | 2.10E-154 | tandem | |
| Sed08g0262 | Sed-Chr8:1543686 | Sed08g0263 | Sed-Chr8:1551488 | 1.70E-139 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g0262 | K05280 | - | csv:101207160 | 507.294 |