Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g0263 | ATGGACGAAATTACCCTTGTCGGAATCGCTGCCGTAACCCTGGTCTACGCCGTCTTCCTCCACCGCTTCGTACTTCTCCGACGAAGATTCCGATCAGAACTCCCCCTCCCGCCGGGCCCGAAACCTTGGCCAATCATCGGAAACTTGCCGCAAATGGGCGGAGCGCCGCTCCACTCTCGCCTCGCCGCCATGTCCGGCGAGTACGGACCTCTTATGTACCTCCGATTCGGCTCCGTCGACATCGTCGTGGCGGCTTCCGCGGCGGTGGCGGAGCAATTCTTGAAGATTCACGACACTAATTTCCTGAGCCGGCCGCCCAACGCCGGCGCTAAATATATTGCTTATAATTATAAGAACATGGCTTTTTCGCCGTACGGTCCACGCTGGCGGCTGCTACGGAAGATCAGCACCGTCCATTTGTTCTCATCAAAAGCCCTAGATGATCAACGGCTCGTACGTGAGGAAGAAATGGCGGCGCTGGTACATTCGCTTGTGAGGGCCGGCGAAGCGCCAGTGAGCTTGGGGAGCTTGCTCACGGTGTGCACTGCAAACGCTTTAGGTCGAACGATGATTGGGCGACGTGTTTTCAGCGACAATAGCGATCCGAAAGCGGATCGGTTTAAGGAGACGGTGGAGCGAATGATGGTGCTGTCCGGAAAGTTCAACCCTGGGGACTTTTTCCCGTCGCTTGAGTGGCTTGACTTACAAGGCATTGCAAAAGAGATGAGAAAGGTCCATAAATGGTTCGATGATTTCTTGTCGGAGATCGTGGTGGAGCACGAGAGATTATTGGCTGGCGGCGGCGATGACGGCGAGCAAAGTGACTTCTTGAGCATGCTTCTATGGTCGAGGGATCAGACAGAAGATGAGAATGAGAAGCTCAATAACACTGAGATTAAGGCCTTTTTATTGGACATGTTCACGGCTGGTACAGACACGTCAGCAAGCACGGTGGAATGGGCCTTGGCTGAGCTCATCAGACATCCCAAAATGATGGTCAAGGCCCAACAAGAAATCGACTATGTAGTGGGCCGTGATCGGGTAGTTTCCGATTTGGACCTTCCCCAACTAAGCTATCTTCAGGCAGTGGTTAAGGAAACATTCCGGCTCCACCCGCCGACTCCACTCTCCCTCCCTCGTATCGCCGCCAAGAGCGTCGATATCAACGGTTACCATATACCGAAGGGCTCAACTCTGTTGGTCGACGTATGGGCCATCGGTCGTAAGGCCCACGTTGATGTGAAGGGAAATCACTTTGAGGTGATCCCCTTTGGGGCCGGGAGAAGAATCTGCCCGGGGATGACTATGGGCTTGAGGATGGTCCAGATGTTAACGGCCACGCTTGTCCATTCGTTTCATTGGGCCTTGCCTAATGGGCTTGAGCCCAATACGTTGAACATGGACGAGGCCTTTGGGCTGACTCTACGTCGGGCCCAGCCTTTGGTTGCTCATCCTCGCCCCAGATTACTGCACACTTGCCTTTGA | 1485 | 54.34 | MDEITLVGIAAVTLVYAVFLHRFVLLRRRFRSELPLPPGPKPWPIIGNLPQMGGAPLHSRLAAMSGEYGPLMYLRFGSVDIVVAASAAVAEQFLKIHDTNFLSRPPNAGAKYIAYNYKNMAFSPYGPRWRLLRKISTVHLFSSKALDDQRLVREEEMAALVHSLVRAGEAPVSLGSLLTVCTANALGRTMIGRRVFSDNSDPKADRFKETVERMMVLSGKFNPGDFFPSLEWLDLQGIAKEMRKVHKWFDDFLSEIVVEHERLLAGGGDDGEQSDFLSMLLWSRDQTEDENEKLNNTEIKAFLLDMFTAGTDTSASTVEWALAELIRHPKMMVKAQQEIDYVVGRDRVVSDLDLPQLSYLQAVVKETFRLHPPTPLSLPRIAAKSVDINGYHIPKGSTLLVDVWAIGRKAHVDVKGNHFEVIPFGAGRRICPGMTMGLRMVQMLTATLVHSFHWALPNGLEPNTLNMDEAFGLTLRRAQPLVAHPRPRLLHTCL | 494 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1551488 | 1557290 | + | Sed0022546.1 | Sed08g0263 | 722039 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g0263 | 494 | SUPERFAMILY | Cytochrome P450 | 37 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | P450 superfamily signature | 422 | 431 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 424 | 433 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed08g0263 | 494 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | E-class P450 group I signature | 431 | 454 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | E-class P450 group I signature | 421 | 431 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | E-class P450 group I signature | 65 | 84 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | E-class P450 group I signature | 361 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | PANTHER | CYTOCHROME P450 98A9 | 6 | 491 | - | - | |
| Sed08g0263 | 494 | Gene3D | Cytochrome P450 | 23 | 486 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed08g0263 | 494 | Pfam | Cytochrome P450 | 37 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0263 | Sed-Chr8:1551488 | Sed10g0891 | Sed-Chr10:6721021 | 2.20E-97 | dispersed | |
| Sed08g0262 | Sed-Chr8:1543686 | Sed08g0263 | Sed-Chr8:1551488 | 1.70E-139 | tandem | |
| Sed08g0263 | Sed-Chr8:1551488 | Sed08g0264 | Sed-Chr8:1559361 | 7.00E-224 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g0263 | K05280 | - | csv:101207160 | 706.442 |