Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0273 ATGGACAGCTTGTTGAGTGCACGGATCAAACCATTGCCTACTCACTGTAGACAAATTCGCTCAACTTTTCGTCCCAAGTTGTTCTTGCAATTTGCTAGAAGATTGGATAAAGGTCGAATGGAAATGGGGAGGTGTTGCGCGCCATTCGACCCAATTGCCGCTGCAGTTCAGCCTGTAGAAAGCCCTACACTTACTCAATTCAACAACACGTCGCCATCCAAAGAGGTGTTGGAGCTGTGGAGAAATGCAAATGCAGTATGCTTTGATTTTGATAGCACAGTTTGTGTAGATGAGGGCATTGATGAATTAGCAGACTTCTGTGGAGCTGGAGAGGCTGTTGCCGAATGGACGGCGAGGGCAATGGGTGGTTCTGTTCCATTTGAGGAAGCCTTGGCTGCTAGACTAACGCTGTTTAACCCTTCACTTTCCCAAGTCGAGGAATTTCTCGCCAAGAGACCTCCAAGGCTTTCTCCAGGTATAGATGAATTAGTTAAAAAGCTAAAAGCTAACAACATTGACGTATATCTGATTTCCGGAGGCTTTCGCCAAATGATCAATCCCGTTGCATCAATTCTTGGGATTTCACATGATAATATTTTTGCCAACCAATTGCTTTTCGGGAGCAAGGGTGAATTCGTTGGTTTCGACGAAAATGAACCTACTTCAAGGAGTGGGGGAAAAGCAACTGCAGTTCAACAACTGAGGAAGGCTCATGGATACAATACGTTGGTCATGATCGGGGATGGTGCGACTGATCTTGAGGCTCGTAAACCAGGAGGTGCTGACATGTATATATGTTACGCTGGTGTTCAACTTCGAGAAAACGTTGCTGCGAAAGCTGATTGGCTGGTCTTCAATTTTGTTGATATGGTCAACTCCCTTGAGTAG 888 45.5 MDSLLSARIKPLPTHCRQIRSTFRPKLFLQFARRLDKGRMEMGRCCAPFDPIAAAVQPVESPTLTQFNNTSPSKEVLELWRNANAVCFDFDSTVCVDEGIDELADFCGAGEAVAEWTARAMGGSVPFEEALAARLTLFNPSLSQVEEFLAKRPPRLSPGIDELVKKLKANNIDVYLISGGFRQMINPVASILGISHDNIFANQLLFGSKGEFVGFDENEPTSRSGGKATAVQQLRKAHGYNTLVMIGDGATDLEARKPGGADMYICYAGVQLRENVAAKADWLVFNFVDMVNSLE 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1593661 1596795 + Sed0020095.5 Sed08g0273 722049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0273 295 Gene3D - 142 294 IPR023214 -
Sed08g0273 295 SUPERFAMILY HAD-like 74 294 IPR036412 -
Sed08g0273 295 CDD HAD_PSP_eu 85 287 - -
Sed08g0273 295 Gene3D - 71 137 IPR023214 -
Sed08g0273 295 Pfam haloacid dehalogenase-like hydrolase 84 257 - -
Sed08g0273 295 PANTHER PHOSPHOSERINE PHOSPHATASE 43 293 IPR050582 GO:0000287(PANTHER)|GO:0004647(PANTHER)|GO:0005737(PANTHER)|GO:0006564(PANTHER)|GO:0009507(PANTHER)|GO:0016311(PANTHER)
Sed08g0273 295 FunFam Phosphoserine phosphatase, chloroplastic 70 125 - -
Sed08g0273 295 NCBIfam phosphoserine phosphatase SerB 77 278 IPR004469 GO:0006564(InterPro)|GO:0036424(InterPro)
Sed08g0273 295 NCBIfam HAD-IB family phosphatase 85 257 - -
Sed08g0273 295 FunFam Phosphoserine phosphatase, chloroplastic 142 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0273 K01079 - - csv:101208305 530.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0271 Sed-Chr8:1593661 Sed08g0273 Sed-Chr8:1593661 1.30E-169 dispersed
Sed08g0273 Sed-Chr8:1593661 Sed12g2006 Sed-Chr12:30946115 2.00E-133 dispersed
Sed08g0272 Sed-Chr8:1593661 Sed08g0273 Sed-Chr8:1593661 1.30E-169 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g605 Blo04g00783 . . . . . . . . . Cma10g00213 Cma11g00120 Car10g00199 . Sed08g0273 . . Bhi02g00098 Tan09g2046 Cmetu02g0607 . . . . Cla06g01565 Cam06g1729 Cec06g1790 Cco06g1790 Clacu06g1697 Cmu06g1643 Cre06g2454 . . Cone13ag0051 Cone19ag0056 Lsi02g00094 . . . . . . Bda14g00864 . Bpe15g00591 . . Sed08g2093 Cmo10g00229 Cmo11g00192 . . . . . Cpe18g00776 Bhi08g01132 Tan05g2414 . Lac10g0123 Hepe07g2487 . . . . . . . . . Lsi06g01440 Csa01g00265 Chy02g02468 Cme02g01855
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006561 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 7 1 1 37