Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0277 ATGGCGAAAACCACAACACCGGGGGGTATTTCGAAGATCTTGGCGAATCCGTCGCCGGATTCGGCCTCCGATGTCCCCGAGGTCGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTACCGATGGGGATATGAAGCTAAAAGCTATTCTTCCATCAAACCTTACGTCTGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGTGTTGTTGATTATTCTCTCAATGACATCCCGAACAAGTCAGAAAAGTATCTAATTGTGACGAAATGTGAGGTTGTTTCTTCTGCTCTAGAAAAGGAGGTAAAAACTGAGGTTAAATTGGAAACCATTGTTTTGAAACCAAAGCAAGAGTGTGACGATACGAGTGGGATTAATAATGGAGCTGGTGGTATCCTTTTAAAACCAAAGCAAGAATTTGTTTCCAAATCTGCTGCCCAGATTGTACATGAGCAGCGTACAAATATGGCACCATCTGCACGAATGTCCATGACAAGGCGAGTTCATCCCCTTGTTTGCTTAAATCCATATCAAGGAGATTGGACCATCAAAGTCCGTGTTACAGACAAGGGAAACCTTCGCACCTACAAGAATGCTCAAGGTGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTGCCGTTGGCAAAGTTTACTACATTTCCAGGGGAACTTTGAAAGTTGCTAATAAGAAATTCAAGACAGTTCAAAATGACTATGAAATGACTTTAAATGTCTATTCTCAAGTAGATGAGGCCAGCAATGAAGCTGCTTTCATTCCTGAAACAAAATTTAATTTTGTCAAGATTGATATGCTAGGTCCACACGTGAATGGAAGGGAGCTTGTTGATGTTATTGGAGTTGTGCAGAGTGTTTCTTCAACAATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTGCTAAACGCGATGTAACTATTGCAGATGAGACGAAAAAGACAGTTGTGATATCTTTATGGAATGATCTTGCAACAAATTTGGGGCAGGAGTTGCTTGACGTTGCCGATCAATCTCCTATAATTGCAGTGAAGCATCTTAAAGTTGGAGATTTTCAAGGTGTATCTTTGTCTACAATAAGTAGAAGCTCAATTTTAATAAACCCAGACATGAAGGAAGCACACGATTTGAGATCCTGGTACGATTCTGAAGGAAAAGCCATATCATTGTCTTCTGTCAGCTCTGGCTTGAGCCCATCATCCAAAAGTGGGTTGAGGTCCATGTACGCTGACCGGGTCTCCCTATCTCATATACTCCAAAATAAATCGTTGGGAGAAGAAAAGCCTGTGTTCTTCAGCATTAGAGCATATGTCAGCTTCATTAAGCCCGATCAAACGATGTGGTATCGGGCTTGTAAAACATGCAACAAGAAGGTGACTGAAGCCATTGGATCAGGATACTGGTGCGAAAGTTGCCAGAAAAACGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTTTCTGATGCAAGTGGTGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGGATTATAGGATGCTCTGCAGATGAGCTCGACCAGCTCAAATCACAGATTGGAGAAGAAAGTTCATATCAACTGAAACTGAAAGAAGCCACTTGGGTTCCACATTTGTTTCGAGTCAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATGACAGTCAGGTCAGTTGCTCCAGTTGACTTTTCTGCTGAATCCAGATTTTTGTTAGATGAAATTGCAAAGATGAAAGCTTCATAA 1869 41.36 MAKTTTPGGISKILANPSPDSASDVPEVVLQVLDLKATGNRYMFTATDGDMKLKAILPSNLTSEVISGNIQNLGLIRVVDYSLNDIPNKSEKYLIVTKCEVVSSALEKEVKTEVKLETIVLKPKQECDDTSGINNGAGGILLKPKQEFVSKSAAQIVHEQRTNMAPSARMSMTRRVHPLVCLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFAVGKVYYISRGTLKVANKKFKTVQNDYEMTLNVYSQVDEASNEAAFIPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSSTMSIRRKINNETAAKRDVTIADETKKTVVISLWNDLATNLGQELLDVADQSPIIAVKHLKVGDFQGVSLSTISRSSILINPDMKEAHDLRSWYDSEGKAISLSSVSSGLSPSSKSGLRSMYADRVSLSHILQNKSLGEEKPVFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCESCQKNDEECSLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEESSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRMTVRSVAPVDFSAESRFLLDEIAKMKAS 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1617414 1621932 + Sed0022878.1 Sed08g0277 722053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0277 622 Gene3D - 173 281 IPR012340 -
Sed08g0277 622 CDD RPA1_DBD_C 454 618 IPR047192 -
Sed08g0277 622 FunFam Replication protein A subunit 432 619 - -
Sed08g0277 622 Coils Coil 537 557 - -
Sed08g0277 622 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Sed08g0277 622 Gene3D - 5 112 IPR012340 -
Sed08g0277 622 CDD RPA1_DBD_B 311 417 - -
Sed08g0277 622 Pfam Replication factor-A C terminal domain 466 612 IPR013955 -
Sed08g0277 622 FunFam Replication protein A subunit 175 284 - -
Sed08g0277 622 Gene3D - 430 619 IPR012340 -
Sed08g0277 622 PANTHER REPLICATION FACTOR A 1, RFA1 177 597 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Sed08g0277 622 FunFam Replication protein A subunit 288 427 - -
Sed08g0277 622 NCBIfam replication factor-a protein 1 (rpa1) 3 618 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed08g0277 622 SUPERFAMILY Nucleic acid-binding proteins 444 619 IPR012340 -
Sed08g0277 622 CDD RPA1_DBD_A 178 274 - -
Sed08g0277 622 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Sed08g0277 622 FunFam Replication protein A subunit 4 114 - -
Sed08g0277 622 Gene3D - 289 429 IPR012340 -
Sed08g0277 622 MobiDBLite consensus disorder prediction 1 18 - -
Sed08g0277 622 MobiDBLite consensus disorder prediction 1 23 - -
Sed08g0277 622 Pfam OB-fold nucleic acid binding domain 189 272 IPR004365 GO:0003676(InterPro)
Sed08g0277 622 SUPERFAMILY Nucleic acid-binding proteins 177 285 IPR012340 -
Sed08g0277 622 Pfam Replication protein A OB domain 307 403 IPR031657 -
Sed08g0277 622 SUPERFAMILY Nucleic acid-binding proteins 294 423 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1813 Sed-Chr3:12025533 Sed08g0277 Sed-Chr8:1617414 7.50E-82 transposed
Sed04g0901 Sed-Chr4:8128451 Sed08g0277 Sed-Chr8:1617414 9.00E-78 transposed
Sed12g2011 Sed-Chr12:30971864 Sed08g0277 Sed-Chr8:1617414 2.5e-313 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0277 K07466 - csv:101208545 1073.54