Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0288 ATGAGATCCGCCGCCGATCTCACCGGCGTTGCCGCCGTGCTTCTCTTTCTCCTTTCCTGCTTCAGTTTCACTTCAACAGAAGCCTACGATGCACTTGATCCTAATGGGAACATCACAATCAAATGGGATGTCATGAGCTGGACTCCGGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCACATTCAAGCTCCAGGTTGGACATTGGGGTGGACATGGGCAAAGAAAGAAGTAATATGGGGCATGATGGGAAGCCAAACAACAGAACAGGGAGACTGTTCAAGATACAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCGACAGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCCTGGGCCCAAGACCCAGGCAATGCAGCCAGTTCTTTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAAACTCCCCAAAAACTTCACTCTTAGAGCACCTGGACCTGGATATACTTGTGGTCCAGCAAAGATTGTGAAGTCAACCAGATTTGTATCTGGAGATAAAAGAAGAATAACCCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCCCAGAAGACACCCACTTGCTGTGTTTCCCTCTCATCCTTCTACAACGATACCATTGTCAACTGCCCAACTTGCACTTGTGGATGTAAAAACAACACGGCGGGTGCTGGGAGCTGTGTGGATCCAGATTCTCCACTTTTAGCTTCAGTAGTGTCAGCTCCTGATAAATCGGGCAACAATGAACCCTTGGTTCAGTGTACTAGCCACATGTGTCCCATTCGAGTCCACTGGCACGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGGTCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTGGTGGTGCAGCATCCCAATTTTGATAATATAACCAAATTATTCAGCTTTAACTATAGGTCGTTGAGCCCATACGGTGACCTAAATGATACCGCCATGTTTTGGGGAGTTAAGTTCTACAATGATTTTCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAGAAAGACCAGAACACTTTCACTTTCGACAAGGGTTGGGCTTTTCCGAGAAGACTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGACGCCTATCCCTATTTGCCAAATGCCAGTTCCAGACCAGCTATGTCTCTACTCGCGACAATCTTAATGTCTTTAGCATTACTGTTGAATTTTGCACTATAA 1344 44.94 MRSAADLTGVAAVLLFLLSCFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWGMMGSQTTEQGDCSRYKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPGNAASSFQVSVGAAGTSNKTVKLPKNFTLRAPGPGYTCGPAKIVKSTRFVSGDKRRITQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCKNNTAGAGSCVDPDSPLLASVVSAPDKSGNNEPLVQCTSHMCPIRVHWHVKLNYKDYWRVKVTITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYRSLSPYGDLNDTAMFWGVKFYNDFLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRLYFNGDNCVMPPPDAYPYLPNASSRPAMSLLATILMSLALLLNFAL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1707122 1709914 + Sed0010385.1 Sed08g0288 722064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0288 447 PIRSF COBRA 3 447 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed08g0288 447 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Sed08g0288 447 PANTHER PROTEIN COBRA 16 439 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed08g0288 447 Pfam COBRA-like protein 52 215 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0288 Sed-Chr8:1707122 Sed12g2020 Sed-Chr12:31062518 2.50E-252 dispersed
Sed08g0288 Sed-Chr8:1707122 Sed08g0289 Sed-Chr8:1710521 1.20E-185 tandem
Sed04g1592 Sed-Chr4:30689915 Sed08g0288 Sed-Chr8:1707122 4.60E-137 transposed
Sed12g2019 Sed-Chr12:31054307 Sed08g0288 Sed-Chr8:1707122 2.00E-109 wgd
Sed08g0288 Sed-Chr8:1707122 Sed08g2132 Sed-Chr8:35298370 1.40E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0288 - - - 0.0