Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0289 ATGGAAGTTAATACCCGGAGTGACCAATTACACAAAATTCTCTTTCAAAGAGAATGCGGCTCGGGTCGACCGCAACGGATTGTGCTTTTGGCACTTTTGGTTTTTGCGGCTTTCTGTTCAACCGGGGCTTACGATCCGTTGGATCCAAACGGAAACATTACAATCAAATGGGATGTAGTCTCGTGGACGGCAGATGGATATGTTGCTGCAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATGCACCGGGATGGACCCTAGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCTATGGTGGGAGCTCAGACAACAGAGCAAGGAGATTGTTCCAAGTTCAAAGGAAATGTACCTCACTGTTGCAAGAAAACCCCAGTAGTTGTTGATTTGCTCCCTGGTGTTCCTTACAACCAGCAATTTTCCAATTGCTGCAAGGGCGGAGTGTTGGCATCTTGGGGACAGGATCCAGTAAGTTCAGTCTCTGCCTTTCAGGTGAGTGTTGGACTAGCTGGCACAACAAACAAAACTGTAAAGTTGCCGAAGAACTTCACTCTGCTCGGTCCAGGACCAGGCTACACGTGCGGACCCGCAAAGATTGTGCCTTCTACAGTTTTCCTCACTCCTGATCGCCGCCGGAAAACTCAAGCACTGATGACTTGGAATGTAACCTGCACTTACTCACAATTTCTGGCCTCTAAGAACCCAACTTGCTGTGTGTCACTCTCAACTTTCTACAATGATACAATCACGTCTTGCCCAAATTGTGCTTGTGGCTGTCAGAACAAACATAATTGTATACAGAGTGGCTCAAAGCTGTTGCACAAGGAGGGAATAAACACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTGTTCGAGTACACTGGCACGTAAAGATCAATTACAAGGATTACTGGCGTGTGAAGGTCGCTGTGACAAACTTCAACTATAGGATGAACTATACACTATGGACACTGGCAGTGCAGCACCCAAATCTGAACAATGTAACTCAAGTCTTCAGCTTTGACTACAAGCCCCTAGTTCCTTATGAATCTATCAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTGCAATCTGAAGTACTATTGAAGAAGGACAAGGATACTTTTACCTTCAAGCAGGGTTGGGCATTTCCCAGAAAGGTATACTTCAATGGCGACGAATGTCAGATGCCACCACCAGAATCATTCCCATTTCTACCCAACTCTGCTCCTGAAGGCTCCGGTGCAGTTATCAAATCGATCACCGCCTTGCTTTTGATGATCTGGTTTCTTCAGTGA 1371 45.22 MEVNTRSDQLHKILFQRECGSGRPQRIVLLALLVFAAFCSTGAYDPLDPNGNITIKWDVVSWTADGYVAAVTMNNFQMYRHINAPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPVSSVSAFQVSVGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPNCACGCQNKHNCIQSGSKLLHKEGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESFPFLPNSAPEGSGAVIKSITALLLMIWFLQ 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1710521 1713753 - Sed0017468.1 Sed08g0289 722065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0289 456 PANTHER PROTEIN COBRA 31 450 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed08g0289 456 PIRSF COBRA 21 456 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed08g0289 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0870 Sed-Chr6:10103328 Sed08g0289 Sed-Chr8:1710521 5.90E-219 dispersed
Sed08g0289 Sed-Chr8:1710521 Sed12g2020 Sed-Chr12:31062518 1.00E-184 dispersed
Sed08g0288 Sed-Chr8:1707122 Sed08g0289 Sed-Chr8:1710521 1.20E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0289 - - - 0.0