Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0297 ATGGTGCAGGATTTATCGTATTTACGTGACTGTTTCGTTCAAGGGAGTGAGGGAGGCAATTCTGAAGCTGTACGCGTTGATGCGGAACTGGCAGCGACGTGTGGTACTAGTTCGTGTAGTTCGAAAGCAAAAGGAAAAAGGGGTTTTGATTGTAATGACTTGAAAGTGAATTTAGATGATGTTTTGATGAATTTGTTATCGTTTGATACTGATGAGTTTTTAAACGAACGCACATGTGAGAACTTTATCAAGTTCTTGGAGTCTGTGGATTGTTTATCCGGCCCACGTAATGGGAAATGTTTGTTGGCAAAACAAGCTAATTCACGAAGTGGTAACAAAAAAGCGTCTAATAGAACATGTGGTTCTTTATGCCTTTGCCCCGAATGGTTGAAGAAGTTAATGCAGGCATTTGCTTTCTTAAACGTTTTCTCAATGTTTATTCAACTACGAAAGGAAATTCTTACCACTAGTCGGTTGGAGCAAGCAATGGACCAGCTGCAGAAACATGGGATTAAGCTTCTCACGGAGGACATGAAAAATATCTCCCTTCTCTGTCCCAAGGCAGTACATTTTGCAAGTGGCAGTTTGGAAGATAGCTGTAACGATACACTTATTACTATTTATTTGACCGAACCAAATGGTCGATGGAAATATGATATTATTGCATCAACGGATATCACTCTACTGAAGAGACGAGAAAAGTCCTTTCAAGTTTACCTGTGGGAGGCTATCAAGAGCCATATGCTTAGACATGGAAGCAGAAGTAAGTTATGTGCGCACTTTTCTTTGGAAGATGTAATCACATCAAAGGAGTCTGCCTCGGATGGAAATGAGGCAAAGCGAGCAAAAAAAAGTGAAACAGCTTCTTCGAGTTCTCAATCAGACCAAAAACAATGTCATGGCTTTTCGAAACTCTTACCTGAGAATATGGTTGAACATCTTGAAAAAAATGTTGGATCTGAGGGCCAGATAGTTCATGTTGAAGACATTGCAGCTAGGAAAGCCAATTATGTGGAGAATCCAAAGGAACTTTGTAATAATGTTATATCAGCACTCAAATGTATTGGAGTAGAAAAATTGTACAGCCATCAGGCACGGTCGATAGAAGCCTCTCTGGCTGGAAAACACGTTGTTGTTGCCACAATGACATCAAGCGGGAAATCTCTTTGCTATAACTTGCCAGTTCTTGAATCAATGTCTCAAAATGACTCATCATGTGCTCTTTACTTATTTCCAACTAAGGCCTTAGCTCAAGATCAACTCAGAAGTTTGCTCATCATGATGAAAGGATTTAGTGATAGCCTGAACATTGGCGTTTATGACGGTGACACATCACAGGCTGACAGGATTTTGTTGCGTGATAATGCTAGGCTGTTAATCACAAATCCAGATATGCTACATCTATCAATCCTGCCACACCACGGACAATTTAGTCGGATATTATCAAATCTACGGTTTATAGTCATTGATGAGGCTCATACTTATAAGGGAGCGTTTGGATGTCATACTGCACTAATACTACGGAGACTTCGTCGGCTATGCTCTCATGTGTATGGAAGTGATCCCTCTTTTATATTCTGCACAGCAACTTCTGCAAATCCACGTCAACATTGCATGGAACTTGGAAATCTATCAAGCTTAGAGTTGATTGAAAATAATGGAAGTCCGTCTTCCAGAAAACTTTTTGTCCTCTGGAATCCTATCATGGCCTCAAGAAATTATCAGAGAGGTATTGATTCTCTGCAGAGTACAGAAACGAACCTTAATTTCAGAAATCCAAGCCCAATTATGGACATTGCAAAGCTCTTTGCGGAAATGGTTCAACATGGACTTCGATGCATTGCTTTTTGTAAAACTCGAAAACTCTGTGAACTCGTTTTATGCTACACGCGGGAAATTCTTAAGGAGAGAGCACCTCATCTGGTTCAGTCTGTGTGTGCTTATCGTGCTGGATACACTGCTGAGGATAGGAGAAGAATTGAAAGTGACCTATTTGGGGGAAACCTTTGTGGTGTTGCTGCAACAAATGCCCTTGAATTGGGTATTGATGTAGGGCATGTTGATGCAACCCTGCATTTGGGCTTTCCTGGCAGTATTGCTAGCTTGTGGCAACAAGCAGGCAGGGCAGGAAGGAGAGATAAGACCTCTCTTTCTGTGTATGTAGCATTTGAAGGGCCTCTTGATCAATATTTCATGAAACATCCCGAAAAACTTTTTGGTAGCTCAATTGAGTGCTGCCATATTGATCCTGAAAACCAACAGGTTCTTGGACAGCATTTGTTATGTGCTGCATATGAGCACCCAGTTTGTATGGTTTATGATCAGAATTTCTTCGGTCCTGGCTTAAACACTGCCCTAATATCGCTGAAAAATAGAGGAGATCTTATTCCTGAGCCATCATGTGGTTCATCTAAAAGTATGTGGAGCTATATTGGGCAAGAGAAAATGCCTTCTCGCTCAATTAGTATCCGAGCCATTGAAGCAGAGAGATACAAAGTTGTAGATCAGCGCCAAAATGAAGTTCTTGAAGAGATCGAGGAAAGCAAGGCTTTCTTTCAGGTATATGAAGGGGCTGTTTATATGCATCAAGGACGAACTTATCTGGTCAAAAGCTTGAATTTGTCAACTATGCTTGCGTTCTGTGAAGAAGCTGATCTAAAATATTACACAAAAATGCGTGATTACACTGACATTCATGTTATTGGTGGTAATTTGGCCTATCCAAGGAGAGCTCCAAACATTCCGCTCTCAAAAACAAATGCACAAGCAAATGATTGCAGAATTACCACCACTTGGTTTGGTTTCTATCGAATATGGAAAGGAAGTAATCAAATTTTTGAGACAGTGGACCTCTCCCTTCCCAAATATTCGTACGACTCCCAGGCAGTGTGGATTCCTGTACCACAATCTATAAAAGAAGAGGTGAAGAGGAAAGACTACGACTTTCGTGCTGGATTGCATGCTGCTTCACATGCTCTTCTGAATGTAGTGCCGCTACGCATAATTTGCAACATGTCTGACTTGGCTCCTGAATGTGCAAATCCTCATGATACACGCTATTTTCCCGAAAGAATTCTGTTGTATGATCAACATCCTGGAGGAACTGGTATGTCACTGCAGATTCAACCCGTTTTCATAGAGCTATTGAATGCGGCTTTAGAACTCCTCACCTCTTGCTGCTGCTTAGGAGAGACCGGCTGCCCTAATTGTGTCCAGAGTCTAGCCTGTCACGAGTACAATGAGGTTTTACACAAGGATGCAGCCAGTTTAATTATCAAGGGCGTTCTAGATGCAGAGAAAGCGTATTGCAGGTAA 3315 41.39 MVQDLSYLRDCFVQGSEGGNSEAVRVDAELAATCGTSSCSSKAKGKRGFDCNDLKVNLDDVLMNLLSFDTDEFLNERTCENFIKFLESVDCLSGPRNGKCLLAKQANSRSGNKKASNRTCGSLCLCPEWLKKLMQAFAFLNVFSMFIQLRKEILTTSRLEQAMDQLQKHGIKLLTEDMKNISLLCPKAVHFASGSLEDSCNDTLITIYLTEPNGRWKYDIIASTDITLLKRREKSFQVYLWEAIKSHMLRHGSRSKLCAHFSLEDVITSKESASDGNEAKRAKKSETASSSSQSDQKQCHGFSKLLPENMVEHLEKNVGSEGQIVHVEDIAARKANYVENPKELCNNVISALKCIGVEKLYSHQARSIEASLAGKHVVVATMTSSGKSLCYNLPVLESMSQNDSSCALYLFPTKALAQDQLRSLLIMMKGFSDSLNIGVYDGDTSQADRILLRDNARLLITNPDMLHLSILPHHGQFSRILSNLRFIVIDEAHTYKGAFGCHTALILRRLRRLCSHVYGSDPSFIFCTATSANPRQHCMELGNLSSLELIENNGSPSSRKLFVLWNPIMASRNYQRGIDSLQSTETNLNFRNPSPIMDIAKLFAEMVQHGLRCIAFCKTRKLCELVLCYTREILKERAPHLVQSVCAYRAGYTAEDRRRIESDLFGGNLCGVAATNALELGIDVGHVDATLHLGFPGSIASLWQQAGRAGRRDKTSLSVYVAFEGPLDQYFMKHPEKLFGSSIECCHIDPENQQVLGQHLLCAAYEHPVCMVYDQNFFGPGLNTALISLKNRGDLIPEPSCGSSKSMWSYIGQEKMPSRSISIRAIEAERYKVVDQRQNEVLEEIEESKAFFQVYEGAVYMHQGRTYLVKSLNLSTMLAFCEEADLKYYTKMRDYTDIHVIGGNLAYPRRAPNIPLSKTNAQANDCRITTTWFGFYRIWKGSNQIFETVDLSLPKYSYDSQAVWIPVPQSIKEEVKRKDYDFRAGLHAASHALLNVVPLRIICNMSDLAPECANPHDTRYFPERILLYDQHPGGTGMSLQIQPVFIELLNAALELLTSCCCLGETGCPNCVQSLACHEYNEVLHKDAASLIIKGVLDAEKAYCR 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1758809 1775325 - Sed0020336.3 Sed08g0297 722073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0297 1104 CDD SF2_C_Hrq 562 722 - -
Sed08g0297 1104 SMART ultradead3 356 562 IPR014001 -
Sed08g0297 1104 MobiDBLite consensus disorder prediction 272 298 - -
Sed08g0297 1104 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 368 549 IPR014001 -
Sed08g0297 1104 Pfam Helicase conserved C-terminal domain 606 712 IPR001650 -
Sed08g0297 1104 PANTHER ATP-DEPENDENT HELICASE HRQ1 109 1101 - -
Sed08g0297 1104 SMART helicmild6 632 713 IPR001650 -
Sed08g0297 1104 Gene3D - 587 755 IPR027417 -
Sed08g0297 1104 Gene3D - 326 546 IPR027417 -
Sed08g0297 1104 FunFam DEAD/DEAH box helicase 591 740 - -
Sed08g0297 1104 CDD DEXHc_Hrq1-like 360 541 - -
Sed08g0297 1104 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 598 754 IPR001650 -
Sed08g0297 1104 Pfam DEAD/DEAH box helicase 362 532 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed08g0297 1104 Pfam MrfA Zn-binding domain 989 1071 IPR018973 -
Sed08g0297 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 719 IPR027417 -
Sed08g0297 1104 Pfam ATP-dependent helicase HRQ1, winged helix domain 748 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0295 Sed-Chr8:1758809 Sed08g0297 Sed-Chr8:1758809 0.00E+00 dispersed
Sed08g0296 Sed-Chr8:1758809 Sed08g0297 Sed-Chr8:1758809 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49