Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0300 ATGCAGGACATACACTCCATCGCCGGCGGCAGCCGCCTGTTCGGCGGCGGAGGCGGCTCCGACCGGCGCCTGCGCCCGCACCTCCACCACCACCAGAACCACCAAGCGTTGAAGTGCCCACGGTGTGATTCTTTGAACACCAAATTCTGTTATTACAATAACTATAACCTCTCTCAGCCGCGCCATTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAGGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGAGGCTGCCGGAAAACCAAACGCTCCTCCAAATCCAAATCCCCCGCGGTTCGCGAACGGAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGTCTCACCGGCGTCACCGCCGTCACCGCCACGGCGGTGACGGCGGCGGCGACGGCGACCGAGGCCGTTTCCGCTCCGTCTTCCGATTCGGCGGCTGAGAAATCGAAACTGTTTTCGGCTCCGAGTACAAACCCTAATTTCGAGACGCCGATTTCGGATTGCGGGATCTTCTCGGAAATTGGAAGCTTCACGAGCTTGATCACGGCGTCGAACGAGTCATTGCCGTTTGAATTCGGCAATATCGCCGCCGATGCGACGCCGTTCGCCGTGAATCATCCGTTTCAAAATCAATGGCCCCCACCGCCGCCGCAGAGAATGATGAACGGTGGCGATGAACTGAAGATGCAGGAGATCACAGCCGGCGGCGGGTACTTGGATCGGACGGCTGATGTGGATCCATCTTTGATGCAGAGTAGCAGATCAAATGACGTGGGGTTTGGACCGTTGGATTGGCAAGCGAACGGTGATCATCAGGTTTTGTTTGATCTTCCCTCCGCCGTTGATCAAGCATACTGGAGTCAGAATCAATGGAGTGATCAAGACCAGCCCAATCTATACCTTCCGTAA 909 57.54 MQDIHSIAGGSRLFGGGGGSDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSKSKSPAVRERKSTSHSSSESSSLTGVTAVTATAVTAAATATEAVSAPSSDSAAEKSKLFSAPSTNPNFETPISDCGIFSEIGSFTSLITASNESLPFEFGNIAADATPFAVNHPFQNQWPPPPPQRMMNGGDELKMQEITAGGGYLDRTADVDPSLMQSSRSNDVGFGPLDWQANGDHQVLFDLPSAVDQAYWSQNQWSDQDQPNLYLP 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1787968 1789465 - Sed0020179.1 Sed08g0300 722076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0300 302 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0300 302 MobiDBLite consensus disorder prediction 1 32 - -
Sed08g0300 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 181 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0300 302 MobiDBLite consensus disorder prediction 82 118 - -
Sed08g0300 302 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0300 302 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0300 302 MobiDBLite consensus disorder prediction 134 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0300 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0300 Sed-Chr8:1787968 Sed08g2508 Sed-Chr8:37865348 2.30E-28 dispersed
Sed12g2028 Sed-Chr12:31116093 Sed08g0300 Sed-Chr8:1787968 7.00E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT1G29160 55.2 3.1e-41 166.0
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT1G29160 54.5 2.6e-40 162.9
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT2G34140 54.7 4.2e-43 172.2
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT2G34140 53.4 6.9e-38 154.8
Sed04g1274 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.4e-39 161.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.1e-39 159.1
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT2G37590 65.7 2.7e-38 157.1
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 55.5 1.5e-36 151.4
Sed08g0219 . 102 453 C2C2-Dof Transcription Factor Family AT3G47500 52.4 8.0e-86 315.5
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 58.3 7.0e-41 166.0
Sed13g1381 . 1 116 C2C2-Dof Transcription Factor Family AT5G02460 58.1 1.0e-39 162.2
Sed13g1380 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 57.2 4.3e-38 156.8
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 64.6 2.8e-37 154.1
Sed05g2954 . 46 122 C2C2-Dof Transcription Factor Family AT5G02460 88.3 1.8e-36 151.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 62.6 2.3e-36 151.0
Sed13g1380 . 27 198 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed13g1381 . 19 190 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed04g1274 . 48 133 C2C2-Dof Transcription Factor Family AT3G55370 76.7 1.7e-36 151.4
Sed08g0300 . 28 302 C2C2-Dof Transcription Factor Family AT5G60850 50.2 8.6e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39265 PF02701 zf-Dof 3.90E-33 No_clan Sed TF