Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g0300 | ATGCAGGACATACACTCCATCGCCGGCGGCAGCCGCCTGTTCGGCGGCGGAGGCGGCTCCGACCGGCGCCTGCGCCCGCACCTCCACCACCACCAGAACCACCAAGCGTTGAAGTGCCCACGGTGTGATTCTTTGAACACCAAATTCTGTTATTACAATAACTATAACCTCTCTCAGCCGCGCCATTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAGGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGAGGCTGCCGGAAAACCAAACGCTCCTCCAAATCCAAATCCCCCGCGGTTCGCGAACGGAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGTCTCACCGGCGTCACCGCCGTCACCGCCACGGCGGTGACGGCGGCGGCGACGGCGACCGAGGCCGTTTCCGCTCCGTCTTCCGATTCGGCGGCTGAGAAATCGAAACTGTTTTCGGCTCCGAGTACAAACCCTAATTTCGAGACGCCGATTTCGGATTGCGGGATCTTCTCGGAAATTGGAAGCTTCACGAGCTTGATCACGGCGTCGAACGAGTCATTGCCGTTTGAATTCGGCAATATCGCCGCCGATGCGACGCCGTTCGCCGTGAATCATCCGTTTCAAAATCAATGGCCCCCACCGCCGCCGCAGAGAATGATGAACGGTGGCGATGAACTGAAGATGCAGGAGATCACAGCCGGCGGCGGGTACTTGGATCGGACGGCTGATGTGGATCCATCTTTGATGCAGAGTAGCAGATCAAATGACGTGGGGTTTGGACCGTTGGATTGGCAAGCGAACGGTGATCATCAGGTTTTGTTTGATCTTCCCTCCGCCGTTGATCAAGCATACTGGAGTCAGAATCAATGGAGTGATCAAGACCAGCCCAATCTATACCTTCCGTAA | 909 | 57.54 | MQDIHSIAGGSRLFGGGGGSDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSKSKSPAVRERKSTSHSSSESSSLTGVTAVTATAVTAAATATEAVSAPSSDSAAEKSKLFSAPSTNPNFETPISDCGIFSEIGSFTSLITASNESLPFEFGNIAADATPFAVNHPFQNQWPPPPPQRMMNGGDELKMQEITAGGGYLDRTADVDPSLMQSSRSNDVGFGPLDWQANGDHQVLFDLPSAVDQAYWSQNQWSDQDQPNLYLP | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1787968 | 1789465 | - | Sed0020179.1 | Sed08g0300 | 722076 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g0300 | 302 | ProSitePatterns | Zinc finger Dof-type signature. | 39 | 75 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Sed08g0300 | 302 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Sed08g0300 | 302 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 29 | 181 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Sed08g0300 | 302 | MobiDBLite | consensus disorder prediction | 82 | 118 | - | - | |
| Sed08g0300 | 302 | ProSiteProfiles | Zinc finger Dof-type profile. | 37 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Sed08g0300 | 302 | Pfam | Dof domain, zinc finger | 35 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Sed08g0300 | 302 | MobiDBLite | consensus disorder prediction | 134 | 158 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0300 | Sed-Chr8:1787968 | Sed08g2508 | Sed-Chr8:37865348 | 2.30E-28 | dispersed | |
| Sed12g2028 | Sed-Chr12:31116093 | Sed08g0300 | Sed-Chr8:1787968 | 7.00E-81 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39265 | PF02701 | zf-Dof | 3.90E-33 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g0300 | - | - | - | 0.0 |