Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0326 ATGGAGTCGGTGGACATAGTTGGGAAGTCTAAAGAGGATGCTTCGCTTCCAAAGGCGACCATGACTAAAATTATTAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAATGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTGGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTACTTGGCTTTAGTGAATACATTGAGGAAGTTTATTCTGCATATGAACAACACAGGATCGAAACTATGCAAGACTCGTTGAAAGGAGGAAAGTGGAGTAGTAATGCAGCTGAGATGACTGAGGAACAAGCTTTGGCGGAGCAGCAAAGAATGTTCGCAGAGGCGCGTGCAAGAATGAATGGTGGCAGTAACGCTGCTCCGAAGCAACCAGAGCGAGAGGAAAGTTTAGAGAGTTAA 477 44.03 MESVDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGKEDKRTIAPEHVLKALEVLGFSEYIEEVYSAYEQHRIETMQDSLKGGKWSSNAAEMTEEQALAEQQRMFAEARARMNGGSNAAPKQPEREESLES 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1960580 1965651 + Sed0024201.1 Sed08g0326 722102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0326 158 Gene3D Histone, subunit A 5 145 IPR009072 GO:0046982(InterPro)
Sed08g0326 158 FunFam Negative cofactor 2 beta 6 144 - -
Sed08g0326 158 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982(InterPro)
Sed08g0326 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Sed08g0326 158 MobiDBLite consensus disorder prediction 135 158 - -
Sed08g0326 158 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Sed08g0326 158 Coils Coil 116 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0326 Sed-Chr8:1960580 Sed12g2050 Sed-Chr12:31327734 3.00E-72 dispersed
Sed12g2049 Sed-Chr12:31327734 Sed08g0326 Sed-Chr8:1960580 9.30E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39270 PF00808 CBFD_NFYB_HMF 6.10E-22 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0326 K21751 - csv:101214627 276.174