Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0333 ATGGACGATAATGTCGACGACCAAAGCAAGCTTCCAGAGCTCAAACTCGATGCTAAGCAGGCTCAAGGTTTTCTCGCTTTCTTCAAAACCCTACCCCCCGACTCGAGAGCTGTTCGATTTTTTGATCGTCGGGATTACTATACTGCCCATGGCGATGATGCAGTTTTCATTGCAAAGACCTATTATCGTACGACAACTGCTTTACGAAAATTGGGCAATGGATCTGCAGCCCTGTCTAGTGTGAGTGCCAGTAAAAATATGTTTGAATCCATTGTTCGGGATCTTCTTTTGGAAAGAATGGACCATACATTGGAGCTTTATGAGGGGAGTGGTTCGAATTGGAGACTGATTAAAAGTGGTTCACCTGGTAATATTGGCAGTTTTGAAGATGTTTTGTTTTCAAATAATGAAATGCAGGATAGCCCCACTATAGTGGCTCTGTTTCCAAACTTCCGAGACAATGGGTGCATTGTGGGACTAGGCTACGTCGATTTAACGAAAAGAGTGATGGGGATTGCTGAATTTCTGGATGATAGCCACTTTACAAATGTGGAGTCAGCTCTGGTTGGTCTTGGTTGTAAGGAATGTCTTCTGCCTCTAGAAAGTGGAAAGTTCAGTGATATAAAACCTCTACATGATACATTGACAAAGTGTGGTGTGATGCTAACTGAGAGGAAGAAATCAGAATTTAAAATGAGAGATTTGGTGCAAGATCTTTCAAGGCTTGTCAAAGGATCCGTTGAACCTGTTAGAGATTTGGTATCTGGATTTGAATTTGCACCTGCTGCCTTGGGAGCATTGCTGGCTTATGCAGAATTACTAGCAGATGAAAGGAATTATGGAATTTATAACATCCAGAAGTACAATCTTGATAGCTATATGAGGTTAGACTCTGCTGCCATGAGAGCGTTAAACATCCTAGAAAGCAAAACTGATGCAAACAAAAACTTTAGCATGTTTGGTCTTATGAATAGAACCTGCACCGCTGGTATGGGTAAAAGATTGCTCCATATGTGGCTAAAACAGCCTCTGTTAGATGTCAAAGAAATTAACTCTAGATTGGATGTTGTTCAAGCTTTTGTGGAGGATACTGCTCTACGCCAAAATTTGAGACAACATCTCAAAAGAATCTCAGATATTGAACGATTGACACACTATCTTGAAAAGAGAAGAGCTGGATTACAGCACATTGTTAAACTTTATCAGTCAAGTATAAGGCTTCCATTCATTAAAAATGCATTGGAGAACTATGTAGGACAATTTTCCTCATTGTTAAAGGAAAAGTATTTGGAATTTCTTGAGATCTGGACTGACAACGATCACCTGAACAAGTTCAATAATCTTGTTGAAACTGCTGTTGATCTTGATCAGCTTGAGAATGGAGAATATATGATTTCATCTAGTTATGACCCTGCTCTGTCCAAGTTGAAGAATGCGCAAGAATCAATAGAGCAGCAAATACAAGACTTGCATAAAAGAGTTGCTAATGATCTTGATCTTCCAGCTGATAAGGCGTTGAAGTTAGACAAAGGTACACAATTTGGTCACGTTTTTAGAATTACTAAGAAAGAGGAACCAAAAGTAAGGAAAAAGCTATCCACCCACTTCATTGTCCTTGAAACCCGAAAAGATGGAGTGAAGTTTACAAATACCAAGCTCAAAAAGCTGGGTGACCAGTATCAGAAAATAATCGACGAGTACAAGAGTTTCCAGAAAGAATTGGTTCACCGAGTAATTGAAACTGCATCATCCTTCAATGAGGTATTCAGACCTTTGGCGGAATTGCTTTCAGAATTGGATGTTTTACTTGGTTTTTCTGATTTAGCCTCTAGCTGTCCAACTCCTTATACTAGACCGGACATCACTTCATCGGACGAGGGAAATATTATATTGGAAGGAAGTAGGCATCCCTGTGTGGAGGCTCAAGACTGGGTTAATTTCATACCAAATGCTTGTAAACTGGTAAGGGGAAAAAGCTGGTTCCAAATCATAACAGGGCCTAATATGGGTGGAAAATCGACATTTATCCGACAGGTTGGGGTGAACATTCTAATGGCACAAGTAGGTTGTTTTGTTCCCTGTGACAAAGCTAGCATTTCTGTTCGTGATTGCATTTTTGCTCGCGTGGGTGCAGGTGACTGTCAACTTCGTGGAGTTTCTACCTTCATGCAAGAGATGCTTGAAACTGCATCTATATTGAAAGGAGCTACAGAGAAATCTTTGATAATCATTGATGAATTGGGCCGTGGGACATCCACTTATGATGGGTTCGGTCTTGCATGGGCCATTTGTGAACATCTCGTTGAAGTGATTAAAGCGCCCACTTTATTTGCAACCCACTTCCATGAACTAACTGCACTAGCTCATGGCAATACTGATCCTGAGCCCCATGGAAAGCAAATTGTTGGCGTGGCAAATTTTCATGTCAGTGCACACATAGACTCATCAATTCACAAGTTGACAATGCTGTACAAGGTTGAACCTGGAGCTTGCGATCAAAGCTTTGGAATTCATGTAGCAGAATTTGCAAATTTTCCTTCTAGTGTTGTGGCACTTGCCAGAGAAAAGGCTGCTGAACTGGAAGATTTCTCCACTGAGACAACTACTTCAGCCCCTACTGCACAAGAGACACCATTGAAGCGGAAACGCGAGTTTGGTTCAGATGACATGTCCAAAGGTGTAGTGCGGGCTCGCCAGTTCTTAGAGGAGTTTTCGAATCTGCCATTGGATAAAATGGATCTGAAGGAAGCTCTGCAGCAAGTGAGCCAATTGCGAGATGGTTTGAAGAAAGACGCCGTGGACTCGAACTGGCTCCAACAATTCCTCTGA 2829 41.46 MDDNVDDQSKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTAHGDDAVFIAKTYYRTTTALRKLGNGSAALSSVSASKNMFESIVRDLLLERMDHTLELYEGSGSNWRLIKSGSPGNIGSFEDVLFSNNEMQDSPTIVALFPNFRDNGCIVGLGYVDLTKRVMGIAEFLDDSHFTNVESALVGLGCKECLLPLESGKFSDIKPLHDTLTKCGVMLTERKKSEFKMRDLVQDLSRLVKGSVEPVRDLVSGFEFAPAALGALLAYAELLADERNYGIYNIQKYNLDSYMRLDSAAMRALNILESKTDANKNFSMFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDVVQAFVEDTALRQNLRQHLKRISDIERLTHYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYVGQFSSLLKEKYLEFLEIWTDNDHLNKFNNLVETAVDLDQLENGEYMISSSYDPALSKLKNAQESIEQQIQDLHKRVANDLDLPADKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLETRKDGVKFTNTKLKKLGDQYQKIIDEYKSFQKELVHRVIETASSFNEVFRPLAELLSELDVLLGFSDLASSCPTPYTRPDITSSDEGNIILEGSRHPCVEAQDWVNFIPNACKLVRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTALAHGNTDPEPHGKQIVGVANFHVSAHIDSSIHKLTMLYKVEPGACDQSFGIHVAEFANFPSSVVALAREKAAELEDFSTETTTSAPTAQETPLKRKREFGSDDMSKGVVRARQFLEEFSNLPLDKMDLKEALQQVSQLRDGLKKDAVDSNWLQQFL 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2017495 2027751 + Sed0003655.1 Sed08g0333 722109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0333 942 CDD ABC_MSH2_euk 630 861 IPR032642 GO:0005524(InterPro)
Sed08g0333 942 Gene3D MutS, connector domain 122 291 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 Coils Coil 553 573 - -
Sed08g0333 942 ProSitePatterns DNA mismatch repair proteins mutS family signature. 740 756 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 SMART DNAend 314 642 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 Coils Coil 473 493 - -
Sed08g0333 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 862 IPR027417 -
Sed08g0333 942 Gene3D - 617 939 IPR027417 -
Sed08g0333 942 FunFam DNA mismatch repair protein MSH2 617 938 - -
Sed08g0333 942 Pfam MutS domain III 299 605 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 Pfam MutS domain I 23 128 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 SMART mutATP5 659 858 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 FunFam DNA mismatch repair protein 7 121 - -
Sed08g0333 942 PIRSF MSH2 6 942 IPR011184 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 FunFam DNA mismatch repair protein 122 291 - -
Sed08g0333 942 Pfam MutS family domain IV 469 565 IPR007861 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 SUPERFAMILY DNA repair protein MutS, domain III 297 611 IPR036187 -
Sed08g0333 942 Coils Coil 911 931 - -
Sed08g0333 942 MobiDBLite consensus disorder prediction 861 885 - -
Sed08g0333 942 Gene3D - 523 616 - -
Sed08g0333 942 Gene3D - 294 522 - -
Sed08g0333 942 Pfam MutS domain II 144 277 IPR007860 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 FunFam DNA mismatch repair protein 294 511 - -
Sed08g0333 942 Pfam MutS domain V 662 861 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Sed08g0333 942 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 35 923 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0006312(PANTHER)|GO:0030983(PANTHER)|GO:0030983(InterPro)|GO:0032301(PANTHER)|GO:0140664(InterPro)
Sed08g0333 942 SUPERFAMILY DNA repair protein MutS, domain II 143 309 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0333 K08735 - - csv:101215589 1705.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0886 Sed-Chr5:7118688 Sed08g0333 Sed-Chr8:2017495 2.90E-46 dispersed
Sed08g0333 Sed-Chr8:2017495 Sed13g0151 Sed-Chr13:975390 1.20E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007788 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 36