Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0334 ATGCCTTGGAGGAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTTGATCATTTCGTCTCCAACAGTTGGTGGGTTGTTTTTTTCCCACTTTGGGTGTTTCATGTGGCTGTTTCGCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTTATAATCGTCATTGGGCTCCGTGCCATGCTGTTGTTGCAATACCTTTGCTTGTAGCATTCGAATTACTTCTTTGTATATACCTCGAGAGCTTATCTGTTTATGGTTTTGGTGCTGTGAATTTGAAGGTTGTCTTTCTACCCTTGCTGGCATTTGAAATCATTATTTTAATCGATAATTTCAGAATGTGTAGGTCACTGATGCCCGGTGACGATGAAAGCATGAGTGATGAGGCATTATGGGAGACTCTTCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTAACTCTACTGAAGATAAGTGGGACTGTTGGGGCTCTTGTTGGCTGGTGGGACTTATTTATTAATTTTGGCATTGCTGAATGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAATCCTGCAATTCATAGAAATACTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTTAGATACTTAGATTGGAACAGTGGACTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGATTGTGTGGCCTTCAAGACATTGGAGGTCATATCATGAAAATCCCCATAATTGTTTTTCAAGTCCTACTCTGCATGTATTTAGAGGGAACGCCTGTGGGTATGAAATCTATATCACTTCCTGTCGTTTTCTCGCCTCTTTTTATACTGCAAGGTGCTGCAGTTATTTATGCTGCATCTAGGTTGGTAGAGAAAGTTGTACTTCTCTTAAGAGGTGGATCTGGCATAGCATTGTATTTCAGTTTTTCTGTTAGGGCTCATGCTTGCTTGGAGTTCTTTCATCGTGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAAGCAGTCAAGAGGAGCAGGCACGATTGTACCATGAAGGTGGTTCTGGGTACAATACTTTTAGTGGATATCCTCCTGAAATTGTGAAGAAGATGCCGAAAAAAGATCTTGCCGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGCCAGCAGGAATATGAAAGACTTCAAAATGAAAAAGTTTTGTGTCGGGTGTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGCAGGCATCGTGTACTATGCAGTACCTGCTGTGATAAGTGTAAAAAGTGCCCAATATGTCGTGTCGCTATCGAAAAACGGTTACCGGTATACGATGTTTAG 1407 43.07 MPWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSNSWWVVFFPLWVFHVAVSRGRFSLPAPSLPYNRHWAPCHAVVAIPLLVAFELLLCIYLESLSVYGFGAVNLKVVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEALWETLPHFWVAISMVFFVAATVLTLLKISGTVGALVGWWDLFINFGIAECFAFLVCTKWSNPAIHRNTQTRESCSSSAVVRYLDWNSGLIVYPEQDQHQDRLCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPVGMKSISLPVVFSPLFILQGAAVIYAASRLVEKVVLLLRGGSGIALYFSFSVRAHACLEFFHRGSRLLGWWSIDESSQEEQARLYHEGGSGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSTCCDKCKKCPICRVAIEKRLPVYDV 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2035001 2042763 + Sed0019445.1 Sed08g0334 722110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0334 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 466 IPR013083 -
Sed08g0334 468 ProSiteProfiles Zinc finger RING-type profile. 421 456 IPR001841 -
Sed08g0334 468 SUPERFAMILY RING/U-box 412 462 - -
Sed08g0334 468 Pfam Transmembrane Fragile-X-F protein 28 293 IPR019396 -
Sed08g0334 468 FunFam Kinesin-like protein KIN-7D, mitochondrial 398 466 - -
Sed08g0334 468 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 468 - -
Sed08g0334 468 Pfam Zinc finger, C3HC4 type (RING finger) 418 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0334 Sed-Chr8:2035001 Sed11g1584 Sed-Chr11:31352017 6.10E-169 dispersed
Sed12g2061 Sed-Chr12:31406526 Sed08g0334 Sed-Chr8:2035001 3.30E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0334 - - - 0.0