Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0365 ATGGATCACTTACAATCGCTCAAACCTTCATTTTCCTTCCCTGATTTCACAGATCCCAATTTCAACCTAAATCCTCAAAACCCAACTCTGAATAACTTCACAAACTTCATACCCTTTTCAAATGACATGTTCTTCACAAACCCACAAGAAATTCCTCAAAACTTGACAGAAACTGGCAGCTTTCAGGCTCTGCAACAAGCTCCTCTTAACTCCCCTGTTTCTGCTCTGTTTCTTGACATTAAGAAGAGAAAATCCATGGAGGTTTCTGAATCCAGCTCTGGGATTTCAACTCCTCAAGTTTCTGAATCTGGGTTGTTCAAGACAAGAAATAATAGTTTAGGGAAAGGGAAGAGATTGAAAAGTATAGAGAAAGAAGAAGAGAAATCTAGTAGAGAAGTGGTTCATGTCAGAGCTAGAAGAGGGCAAGCAACTGATAGCCATAGTTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATAGTCCCAGGATGTTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATTAATTATGTCCAGTCTCTTCAGAATCAAGTGGAGTTTCTATCCATGAAACTAGCTGCTGCTAGCTCTTTTCATGACTTCAACTCGGAGGCGGATGCGATATTGAAATTACAGAGAGCAAAGGCAAATGAAGCAAAAGAATTGGAGAGATTAATAAGAGAAGGATATGGAGGAGTAGCTTACTTCCACTCAACTTTGCCTCTTTAA 762 39.76 MDHLQSLKPSFSFPDFTDPNFNLNPQNPTLNNFTNFIPFSNDMFFTNPQEIPQNLTETGSFQALQQAPLNSPVSALFLDIKKRKSMEVSESSSGISTPQVSESGLFKTRNNSLGKGKRLKSIEKEEEKSSREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFHDFNSEADAILKLQRAKANEAKELERLIREGYGGVAYFHSTLPL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2197076 2199802 - Sed0009976.1 Sed08g0365 722141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0365 253 MobiDBLite consensus disorder prediction 89 110 - -
Sed08g0365 253 Coils Coil 219 239 - -
Sed08g0365 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 192 IPR011598 GO:0046983(InterPro)
Sed08g0365 253 FunFam transcription factor BEE 3-like 139 210 - -
Sed08g0365 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 91 221 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed08g0365 253 MobiDBLite consensus disorder prediction 88 148 - -
Sed08g0365 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 209 IPR036638 GO:0046983(InterPro)
Sed08g0365 253 MobiDBLite consensus disorder prediction 116 148 - -
Sed08g0365 253 Gene3D - 138 211 IPR036638 GO:0046983(InterPro)
Sed08g0365 253 SMART finulus 148 198 IPR011598 GO:0046983(InterPro)
Sed08g0365 253 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983(InterPro)
Sed08g0365 253 CDD bHLH_AtBPE_like 133 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1419 Sed-Chr6:38938962 Sed08g0365 Sed-Chr8:2197076 7.20E-28 dispersed
Sed08g0365 Sed-Chr8:2197076 Sed11g1528 Sed-Chr11:30857573 2.50E-28 dispersed
Sed03g1169 Sed-Chr3:7291405 Sed08g0365 Sed-Chr8:2197076 8.00E-26 transposed
Sed12g2081 Sed-Chr12:31556799 Sed08g0365 Sed-Chr8:2197076 4.30E-100 wgd
Sed08g0365 Sed-Chr8:2197076 Sed08g2182 Sed-Chr8:35745054 2.00E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39276 PF00010 HLH 4.20E-05 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0365 - - - 0.0