Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0367 ATGGCTTTCAAACTTCAAACCCTCATAAACCCCACTCTTGTTTTCTTCTTTACATTCATGTTCTTCACATCTGCTTCTAAAACAACTTCTCTAGACCACAATTCCAACCACTGTACACCTAAAAACTGTGGATTTGGTCCAAATCTAAGCTACCCCTTTTGGATCGATGGTGTTCACGAATCTTCATGCGGGTTACCAGATTTCAAAATCAAATGCAATGAAGATCATTACCCAGTTCTTGAAATCTCCGATGAGGATTTCATCATCCAAAACATTTTCCCCCAAAACCATTCGTTTCTGGTTGTCAGTGTTGATGCTTACGGCCATGAACATTCATGTCCTTTACTTGAGAATAGCCTTGATGATAAGCCGTTTCGGTTTTCATCTGATACTGAGTTTGTGGAGTTTAAGAAAACTCCCAGTTGCTACCGGCCTTCTCCGATTCGTGTTCCTGTCCGCAAGAAGCCGAGTGAGAAAATGAATTATGTTGACACTTTGAAGAGGGGGTTTGTTCTGAATTGGATTGCACCGGATTGCAGCAAAGGACCTCGTTTCAATAGCTGCAAACATGGTAGTGGAAGGAACAACATTATCATTGGCGTATGTGTTGGTGTTGGAGGCTTCTTTTTAATCTTACTTGCTCTTTGCATCGGCTACCGATGGCGCCAGCTTCGTCGTCGAAGGTCTCACATGGTGCCATACGTGACACGAAGCATTCCCTCGAATCCGTCAAATCCTCCGGTGGAAGAACTTGAGAAGGGGGGAGGTTCCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACCAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCTTACTCAAAGATGGGCGTGCCGTTGCTGTCAAACGGTTGTTCGAAAGCAATTTTAGGAGAGTTGAGCAGTTCATGAATGAGGTGGGGATCCTTGCCCGGCTGCGTCACCGCAACCTCGTTACGCTTTACGGTTGCACCTCGCGCAGCAGCCGCGAGCTTCTGCTTGTGTATGAATACATCTCGAATGGCACGGTGGCTGAAAATCTCCATGGCAAACTAGCAAAGCCTGGCAAGCTTCCATGGTCTACAAGAATGAAGATTGCCATAGAGACTGCAAATGCCTTGGTGTATCTCCATGCTTCTGAAATCATTCACCGTGATGTCAAAACCACCAACATTCTCCTCGACAACAACTTTTGTGTTAAAGTAGCCGATTTCGGATTGTCCCGTCTCTTCCCTCTAGACGTTACGCACGTTTCCACCACTCCACAAGGTACTCCTGGCTATGTCGATCCGGAGTACCATCAGTGCTACCAACTCTCTGATAAAAGCGATGTCTTCAGCTTCGGCGTGGTACTAATTGAACTCATATCTTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAATCTATTCAACATGGCCATCAACAAAATCCAAAGCCACGCACTACACGAACTCGTCGACCCCTCACTTGGTTTCGAATCGGACTACAAGATCCATGACATGATAACCGGTGTAGCCGAGTTGGCATTTCGATGCCTGCAAAACATGAAAGATGAGAGGCCAACAATGATGGAGGTTCTCAACACTCTGACCATCATACAGAAACAGAACGCCGAGAAAGGAAACGATCAAGACACCATGATTTCTGGGAAGGACGACGCCGTGCTGCTGAAAAATGGATACGGATCTTCGCCGAGTTCCCTGTCTGTATCTTGGGTTAGCAGTGGCACTTCCACAGCAACTAATGAAACTGTCAGCGCTTAA 1818 46.09 MAFKLQTLINPTLVFFFTFMFFTSASKTTSLDHNSNHCTPKNCGFGPNLSYPFWIDGVHESSCGLPDFKIKCNEDHYPVLEISDEDFIIQNIFPQNHSFLVVSVDAYGHEHSCPLLENSLDDKPFRFSSDTEFVEFKKTPSCYRPSPIRVPVRKKPSEKMNYVDTLKRGFVLNWIAPDCSKGPRFNSCKHGSGRNNIIIGVCVGVGGFFLILLALCIGYRWRQLRRRRSHMVPYVTRSIPSNPSNPPVEELEKGGGSYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLFESNFRRVEQFMNEVGILARLRHRNLVTLYGCTSRSSRELLLVYEYISNGTVAENLHGKLAKPGKLPWSTRMKIAIETANALVYLHASEIIHRDVKTTNILLDNNFCVKVADFGLSRLFPLDVTHVSTTPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLIELISSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPSLGFESDYKIHDMITGVAELAFRCLQNMKDERPTMMEVLNTLTIIQKQNAEKGNDQDTMISGKDDAVLLKNGYGSSPSSLSVSWVSSGTSTATNETVSA 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2214851 2218002 - Sed0002373.1 Sed08g0367 722143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0367 605 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524(InterPro)
Sed08g0367 605 Pfam Protein kinase domain 278 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0367 605 Gene3D Phosphorylase Kinase; domain 1 251 352 - -
Sed08g0367 605 ProSiteProfiles Protein kinase domain profile. 276 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0367 605 SMART serkin_6 276 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0367 605 SUPERFAMILY Protein kinase-like (PK-like) 258 546 IPR011009 -
Sed08g0367 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0367 605 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 594 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed08g0367 605 Gene3D Transferase(Phosphotransferase) domain 1 353 574 - -
Sed08g0367 605 MobiDBLite consensus disorder prediction 581 605 - -
Sed08g0367 605 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 248 352 - -
Sed08g0367 605 FunFam Wall-associated receptor kinase-like 20 353 561 - -
Sed08g0367 605 Pfam Wall-associated receptor kinase galacturonan-binding 38 102 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0367 Sed-Chr8:2214851 Sed10g0406 Sed-Chr10:2510059 3.30E-74 dispersed
Sed08g0367 Sed-Chr8:2214851 Sed08g0368 Sed-Chr8:2214851 5.50E-239 tandem
Sed01g1734 Sed-Chr1:12630512 Sed08g0367 Sed-Chr8:2214851 5.30E-142 wgd
Sed12g2091 Sed-Chr12:31645635 Sed08g0367 Sed-Chr8:2214851 2.40E-256 wgd
Sed06g1910 Sed-Chr6:43456289 Sed08g0367 Sed-Chr8:2214851 5.10E-118 wgd
Sed07g2107 Sed-Chr7:36577347 Sed08g0367 Sed-Chr8:2214851 5.30E-123 wgd
Sed08g0367 Sed-Chr8:2214851 Sed08g2196 Sed-Chr8:35825832 3.80E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79584 PF00069 Pkinase 5.00E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0367 - - - 0.0