Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0368 | ATGAACAGCTCTCGTCGTACGCCGCCCGCCCGCCCCGCCACACTTTTTACGTTTGTTGCTGCCTTCCTCCTCCTCTTTCCGTCGTCACTTGGCGATGACGATGACTGCTCGTACGAGGGGCTTCCGTGTCCTCCTGTGTCTCGTAGTGGAAGGAACAACATTATCATTGGCGTATGTGTTGGTGTTGGAGGCTTCTTTTTAATCTTACTTGCTCTTTGCATCGGCTACCGATGGCGCCAGCTTCGTCGTCGAAGGTCTCACATGGTGCCATACGTGACACGAAGCATTCCCTCGAATCCGTCAAATCCTCCGGTGGAAGAACTTGAGAAGGGGGGAGGTTCCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACCAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCTTACTCAAAGATGGGCGTGCCGTTGCTGTCAAACGGTTGTTCGAAAGCAATTTTAGGAGAGTTGAGCAGTTCATGAATGAGGTGGGGATCCTTGCCCGGCTGCGTCACCGCAACCTCGTTACGCTTTACGGTTGCACCTCGCGCAGCAGCCGCGAGCTTCTGCTTGTGTATGAATACATCTCGAATGGCACGGTGGCTGAAAATCTCCATGGCAAACTAGCAAAGCCTGGCAAGCTTCCATGGTCTACAAGAATGAAGATTGCCATAGAGACTGCAAATGCCTTGGTGTATCTCCATGCTTCTGAAATCATTCACCGTGATGTCAAAACCACCAACATTCTCCTCGACAACAACTTTTGTGTTAAAGTAGCCGATTTCGGATTGTCCCGTCTCTTCCCTCTAGACGTTACGCACGTTTCCACCACTCCACAAGGTACTCCTGGCTATGTCGATCCGGAGTACCATCAGTGCTACCAACTCTCTGATAAAAGCGATGTCTTCAGCTTCGGCGTGGTACTAATTGAACTCATATCTTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAATCTATTCAACATGGCCATCAACAAAATCCAAAGCCACGCACTACACGAACTCGTCGACCCCTCACTTGGTTTCGAATCGGACTACAAGATCCATGACATGATAACCGGTGTAGCCGAGTTGGCATTTCGATGCCTGCAAAACATGAAAGATGAGAGGCCAACAATGATGGAGGTTCTCAACACTCTGACCATCATACAGAAACAGAACGCCGAGAAAGGAAACGATCAAGACACCATGATTTCTGGGAAGGACGACGCCGTGCTGCTGAAAAATGGATACGGATCTTCGCCGAGTTCCCTGTCTGTATCTTGGGTTAGCAGTGGCACTTCCACAGCAACTAATGAAACTGTCAGCGCTTAA | 1389 | 49.39 | MNSSRRTPPARPATLFTFVAAFLLLFPSSLGDDDDCSYEGLPCPPVSRSGRNNIIIGVCVGVGGFFLILLALCIGYRWRQLRRRRSHMVPYVTRSIPSNPSNPPVEELEKGGGSYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLFESNFRRVEQFMNEVGILARLRHRNLVTLYGCTSRSSRELLLVYEYISNGTVAENLHGKLAKPGKLPWSTRMKIAIETANALVYLHASEIIHRDVKTTNILLDNNFCVKVADFGLSRLFPLDVTHVSTTPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLIELISSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPSLGFESDYKIHDMITGVAELAFRCLQNMKDERPTMMEVLNTLTIIQKQNAEKGNDQDTMISGKDDAVLLKNGYGSSPSSLSVSWVSSGTSTATNETVSA | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2214851 | 2219706 | - | Sed0002373.2 | Sed08g0368 | 722144 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0368 | 462 | FunFam | Wall-associated receptor kinase-like 20 | 210 | 418 | - | - | |
Sed08g0368 | 462 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 253 | 265 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0368 | 462 | SMART | serkin_6 | 133 | 407 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0368 | 462 | FunFam | WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) | 105 | 209 | - | - | |
Sed08g0368 | 462 | Gene3D | Phosphorylase Kinase; domain 1 | 108 | 209 | - | - | |
Sed08g0368 | 462 | PANTHER | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 | 44 | 451 | IPR044652 | GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER) | |
Sed08g0368 | 462 | ProSiteProfiles | Protein kinase domain profile. | 133 | 407 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0368 | 462 | SUPERFAMILY | Protein kinase-like (PK-like) | 115 | 403 | IPR011009 | - | |
Sed08g0368 | 462 | Gene3D | Transferase(Phosphotransferase) domain 1 | 210 | 431 | - | - | |
Sed08g0368 | 462 | ProSitePatterns | Protein kinases ATP-binding region signature. | 139 | 161 | IPR017441 | GO:0005524(InterPro) | |
Sed08g0368 | 462 | MobiDBLite | consensus disorder prediction | 438 | 462 | - | - | |
Sed08g0368 | 462 | Pfam | Protein kinase domain | 134 | 404 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2107 | Sed-Chr7:36577347 | Sed08g0368 | Sed-Chr8:2214851 | 3.10E-123 | dispersed | |
Sed08g0368 | Sed-Chr8:2214851 | Sed12g2091 | Sed-Chr12:31645635 | 5.40E-202 | dispersed | |
Sed08g0367 | Sed-Chr8:2214851 | Sed08g0368 | Sed-Chr8:2214851 | 5.50E-239 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79585 | PF00069 | Pkinase | 2.50E-47 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0368 | - | - | - | 0.0 |