Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0368 ATGAACAGCTCTCGTCGTACGCCGCCCGCCCGCCCCGCCACACTTTTTACGTTTGTTGCTGCCTTCCTCCTCCTCTTTCCGTCGTCACTTGGCGATGACGATGACTGCTCGTACGAGGGGCTTCCGTGTCCTCCTGTGTCTCGTAGTGGAAGGAACAACATTATCATTGGCGTATGTGTTGGTGTTGGAGGCTTCTTTTTAATCTTACTTGCTCTTTGCATCGGCTACCGATGGCGCCAGCTTCGTCGTCGAAGGTCTCACATGGTGCCATACGTGACACGAAGCATTCCCTCGAATCCGTCAAATCCTCCGGTGGAAGAACTTGAGAAGGGGGGAGGTTCCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACCAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCTTACTCAAAGATGGGCGTGCCGTTGCTGTCAAACGGTTGTTCGAAAGCAATTTTAGGAGAGTTGAGCAGTTCATGAATGAGGTGGGGATCCTTGCCCGGCTGCGTCACCGCAACCTCGTTACGCTTTACGGTTGCACCTCGCGCAGCAGCCGCGAGCTTCTGCTTGTGTATGAATACATCTCGAATGGCACGGTGGCTGAAAATCTCCATGGCAAACTAGCAAAGCCTGGCAAGCTTCCATGGTCTACAAGAATGAAGATTGCCATAGAGACTGCAAATGCCTTGGTGTATCTCCATGCTTCTGAAATCATTCACCGTGATGTCAAAACCACCAACATTCTCCTCGACAACAACTTTTGTGTTAAAGTAGCCGATTTCGGATTGTCCCGTCTCTTCCCTCTAGACGTTACGCACGTTTCCACCACTCCACAAGGTACTCCTGGCTATGTCGATCCGGAGTACCATCAGTGCTACCAACTCTCTGATAAAAGCGATGTCTTCAGCTTCGGCGTGGTACTAATTGAACTCATATCTTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAATCTATTCAACATGGCCATCAACAAAATCCAAAGCCACGCACTACACGAACTCGTCGACCCCTCACTTGGTTTCGAATCGGACTACAAGATCCATGACATGATAACCGGTGTAGCCGAGTTGGCATTTCGATGCCTGCAAAACATGAAAGATGAGAGGCCAACAATGATGGAGGTTCTCAACACTCTGACCATCATACAGAAACAGAACGCCGAGAAAGGAAACGATCAAGACACCATGATTTCTGGGAAGGACGACGCCGTGCTGCTGAAAAATGGATACGGATCTTCGCCGAGTTCCCTGTCTGTATCTTGGGTTAGCAGTGGCACTTCCACAGCAACTAATGAAACTGTCAGCGCTTAA 1389 49.39 MNSSRRTPPARPATLFTFVAAFLLLFPSSLGDDDDCSYEGLPCPPVSRSGRNNIIIGVCVGVGGFFLILLALCIGYRWRQLRRRRSHMVPYVTRSIPSNPSNPPVEELEKGGGSYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLFESNFRRVEQFMNEVGILARLRHRNLVTLYGCTSRSSRELLLVYEYISNGTVAENLHGKLAKPGKLPWSTRMKIAIETANALVYLHASEIIHRDVKTTNILLDNNFCVKVADFGLSRLFPLDVTHVSTTPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLIELISSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPSLGFESDYKIHDMITGVAELAFRCLQNMKDERPTMMEVLNTLTIIQKQNAEKGNDQDTMISGKDDAVLLKNGYGSSPSSLSVSWVSSGTSTATNETVSA 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2214851 2219706 - Sed0002373.2 Sed08g0368 722144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0368 462 FunFam Wall-associated receptor kinase-like 20 210 418 - -
Sed08g0368 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0368 462 SMART serkin_6 133 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0368 462 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 105 209 - -
Sed08g0368 462 Gene3D Phosphorylase Kinase; domain 1 108 209 - -
Sed08g0368 462 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 44 451 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed08g0368 462 ProSiteProfiles Protein kinase domain profile. 133 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0368 462 SUPERFAMILY Protein kinase-like (PK-like) 115 403 IPR011009 -
Sed08g0368 462 Gene3D Transferase(Phosphotransferase) domain 1 210 431 - -
Sed08g0368 462 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524(InterPro)
Sed08g0368 462 MobiDBLite consensus disorder prediction 438 462 - -
Sed08g0368 462 Pfam Protein kinase domain 134 404 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2107 Sed-Chr7:36577347 Sed08g0368 Sed-Chr8:2214851 3.10E-123 dispersed
Sed08g0368 Sed-Chr8:2214851 Sed12g2091 Sed-Chr12:31645635 5.40E-202 dispersed
Sed08g0367 Sed-Chr8:2214851 Sed08g0368 Sed-Chr8:2214851 5.50E-239 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79585 PF00069 Pkinase 2.50E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0368 - - - 0.0