Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0380 | ATGTCCGATAGCGCTAAATCAGTTCTCGAAGAGGAGATTTCAAAGCTTGAAACCAAGTCCAAGCGCGGCGCCGATGGCGGAGATGCCGATGTTACTGCGAAGAAGTTTAGAACGGAAGCTGCTGCTGATTTAGCCGACAAAACTGGAGACTGTACCGGAAGAAATTTGGAAATTGTTAATGGCGGTGAAGAAAGTAAGATCGTCGGGAGAGGAGTGGAGTTTGAAATCGAAGCGGATGCGGCGGAGGATAAAGGGTCCAGGCATACTATGGAGGATGCCTGGGTTTTGCTCTTGGATGCGAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACATGGGGGTCGGTTAGCTGCTGAGTACACTCAAAAGCATTTGCATACTAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGTAAAACTGACGAGTCTCTTATTCAAGAAAGTTCTGCAGGGGGGTGGCAGGATGGTGCTACTGCTGTTTGTGTTTGGGTAATAGGCCAAACGGTTTTTGTAGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCCCGATCATTGACCACTGATAAATCATTGAATAATCCTAATGCTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAGCATAAGGCAATCTACCCACAGGAGAGAGCTCGCATTCAAAAGGCTGGTGGTGTTGTTGGCTCAAATGGTCGACTGCAGGGTCGCCTTGAAGTTTCTCGAGCATTTGGAGATCGTCAATTTAAAAAGGTTCACTGCATTCATTCATACACCCTGCTTATTATCCATTTATTCCTATTGTCTATAGTTTAA | 879 | 45.16 | MSDSAKSVLEEEISKLETKSKRGADGGDADVTAKKFRTEAAADLADKTGDCTGRNLEIVNGGEESKIVGRGVEFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEYTQKHLHTNVLSAGLPRELLDVKATKKAILDGFRKTDESLIQESSAGGWQDGATAVCVWVIGQTVFVANVGDAKAVVARSLTTDKSLNNPNAGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKVHCIHSYTLLIIHLFLLSIV | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2294221 | 2300930 | + | Sed0009882.1 | Sed08g0380 | 722156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0380 | 292 | CDD | PP2Cc | 81 | 272 | IPR001932 | - | |
Sed08g0380 | 292 | ProSiteProfiles | PPM-type phosphatase domain profile. | 77 | 292 | IPR001932 | - | |
Sed08g0380 | 292 | PANTHER | PROTEIN PHOSPHATASE 2C | 66 | 273 | IPR015655 | GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro) | |
Sed08g0380 | 292 | Pfam | Protein phosphatase 2C | 82 | 272 | IPR001932 | - | |
Sed08g0380 | 292 | SMART | PP2C_4 | 73 | 292 | IPR001932 | - | |
Sed08g0380 | 292 | Gene3D | - | 61 | 284 | IPR036457 | - | |
Sed08g0380 | 292 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Sed08g0380 | 292 | SUPERFAMILY | PP2C-like | 76 | 273 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0380 | Sed-Chr8:2294221 | Sed07g0822 | Sed-Chr7:6050722 | 1.90E-19 | dispersed | |
Sed08g0380 | Sed-Chr8:2294221 | Sed07g0821 | Sed-Chr7:6050722 | 1.90E-19 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0380 | K17500 | - | csv:101216467 | 456.062 |