Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0380 ATGTCCGATAGCGCTAAATCAGTTCTCGAAGAGGAGATTTCAAAGCTTGAAACCAAGTCCAAGCGCGGCGCCGATGGCGGAGATGCCGATGTTACTGCGAAGAAGTTTAGAACGGAAGCTGCTGCTGATTTAGCCGACAAAACTGGAGACTGTACCGGAAGAAATTTGGAAATTGTTAATGGCGGTGAAGAAAGTAAGATCGTCGGGAGAGGAGTGGAGTTTGAAATCGAAGCGGATGCGGCGGAGGATAAAGGGTCCAGGCATACTATGGAGGATGCCTGGGTTTTGCTCTTGGATGCGAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACATGGGGGTCGGTTAGCTGCTGAGTACACTCAAAAGCATTTGCATACTAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGTAAAACTGACGAGTCTCTTATTCAAGAAAGTTCTGCAGGGGGGTGGCAGGATGGTGCTACTGCTGTTTGTGTTTGGGTAATAGGCCAAACGGTTTTTGTAGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCCCGATCATTGACCACTGATAAATCATTGAATAATCCTAATGCTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAGCATAAGGCAATCTACCCACAGGAGAGAGCTCGCATTCAAAAGGCTGGTGGTGTTGTTGGCTCAAATGGTCGACTGCAGGGTCGCCTTGAAGTTTCTCGAGCATTTGGAGATCGTCAATTTAAAAAGGTTCACTGCATTCATTCATACACCCTGCTTATTATCCATTTATTCCTATTGTCTATAGTTTAA 879 45.16 MSDSAKSVLEEEISKLETKSKRGADGGDADVTAKKFRTEAAADLADKTGDCTGRNLEIVNGGEESKIVGRGVEFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEYTQKHLHTNVLSAGLPRELLDVKATKKAILDGFRKTDESLIQESSAGGWQDGATAVCVWVIGQTVFVANVGDAKAVVARSLTTDKSLNNPNAGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKVHCIHSYTLLIIHLFLLSIV 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2294221 2300930 + Sed0009882.1 Sed08g0380 722156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0380 292 CDD PP2Cc 81 272 IPR001932 -
Sed08g0380 292 ProSiteProfiles PPM-type phosphatase domain profile. 77 292 IPR001932 -
Sed08g0380 292 PANTHER PROTEIN PHOSPHATASE 2C 66 273 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed08g0380 292 Pfam Protein phosphatase 2C 82 272 IPR001932 -
Sed08g0380 292 SMART PP2C_4 73 292 IPR001932 -
Sed08g0380 292 Gene3D - 61 284 IPR036457 -
Sed08g0380 292 MobiDBLite consensus disorder prediction 1 30 - -
Sed08g0380 292 SUPERFAMILY PP2C-like 76 273 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0380 Sed-Chr8:2294221 Sed07g0822 Sed-Chr7:6050722 1.90E-19 dispersed
Sed08g0380 Sed-Chr8:2294221 Sed07g0821 Sed-Chr7:6050722 1.90E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0380 K17500 - csv:101216467 456.062