Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0382 ATGGCGTACTCAACCATCTTCAACGCCTACATCATCAAGCCCTCCATTTCCATCTCCTTCAAACCCACTTCCCCTTCTCCCTTCTCCAAATCCTCAACCCGCTTCTTCACGCGCCTTCTCTTCAGGAACCTCCCCATGGGGTTCGCCAGCTTCCCGTCCCGTCCCGGCCCCGTCTCCGGTGCCCGCTGTGCGGCCCAATTCAAGTGGGTGGAAGTTGGGTCCCGGGAGAATCAGCAGGGCTCTGTCGGGAACGTTGCGTTCCCATTTTGGCAGCATCGGCCCTGCTTCAATTATGGGCGCCTTGCGTATGAGGATGTGTCCAGTGATGATTCCGATGTCGAATTCCGGTCGCCGCCGGGGAGAATTAGTTCACCAACACTTGATAACGTCGATGAGTGGAGATGGAAGTTAACCATGCTTCTACGCAACAATGACGAGCAAGAAGTAGTGTCAAGGGAGAAAAAAGACAGACGTGATTTTGATCAACTTTCAGCATTGGCAACCAGAATGGGTTTGCATAGCCGTCAATATTCTAAAGTCATTGTATTTAGTAAAGACCCTTTGCCAAATTATAGGCCGGATCTAGATGATAAGCGACCACAGAGGGAGGTGGTCATACCTTTAGGGGTCCAACGTGAAGTTGAAGGTCAACTCAGATTGTACCAATCACACAAGTCTGGGACAAGAGGGTGTTTTTCAAATGGTTACTTGCCAAAATCGAGCATTGTTGAAAACAGTGCGAACAATAATGGACTTTTTAAGCACCAGGAGGAGCCTTTGACAACACAAAATGTTGTCATGGAGAAAATTCTTCGTCGCAAAAGTCTGCAACTGAGGAATCAATGCCAAGATTGGCAGGAATCTCCCGAGGGCCAAAAAATGATGGAATTTCGCAAAAGTCTCCCTGCATTCAAAGAGAGGGAAACATTTTTAAAAGCCATTTCAGAAAATCAGGTAGTCGTTGTCTCTGGTGAAACTGGTTGTGGTAAAACCACACAGCTTCCTCAGTATATATTAGAATCTGAGATTGAAGCCGCTCGTGGAGCTTCCTGTAGTATCATATGTACCCAGCCGAGACGTATTTCTGCCATGGCCGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAGCTGGGAGAGTCTGTTGGTTATAAAGTTCGGTTAGAGGGTATAAAAGGGAGGGACACTCGTCTTCTATTTTGCACTACTGGTGTACTATTGAGAAGATTGCTTGTTGACAGAAATTTGAAAGGTGTATCCCATGTTATTATTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTGATTGTCCTGAAAGATCTTCTTCCTCGGCGGCCGGATTTGAGGTTGATCTTAATGAGCGCAACTCTAAATGCCGAACTTTTTTCTTCTTATTTTGGCGGTGCTCCAACAATGCACATTCCTGGTTTCACATACCCAGTCCGTGCACACTTTCTTGAGAATATTCTAGAGATGACTGGCTATCGATTGACTTCATATAATCAAATTGATGATTATGGTCAAGATAAGGCATGGAAAATGCATAAACAAGCTCCAGCTATAAAGAAAAGGAAGACACAGATTGCTTCATCTGTTGAGGATGCATTTGAGGCTGCTGACTTTTCAACATACAGTCCTCGAACACAGGAGTCTCTATCCTGTTGGAATCCTGACTCAATTGGCTTCAACCTTATTGAGCATGCTCTCTCTTACATTGTCGAGAGGGAGAGGCCGGGTGCTATTTTAGTTTTCATGACTGGTTGGGATGATATTAACGCCTTAAAGGACCAGCTCCAATCTCATCCTTTATTAGGGGATCCCAGCAAAGTCTTGCTCCTTGCATGTCATGGTTCGATGGCGAGCTCTGAGCAGAAACTGATATTTGATAAACCTGAAGATGGAGTCAGGAAAATAGTCCTAGCTACGAACATGGCTGAGACTAGTATCACCATCAATGACGTAGTTTTTGTTGTTGACTGTGGAAAAGCAAAGGAGACATCCTATGATGCAATAAACAACACTCCTTGTTTGCTTCCAACTTGGATCTCTAAGGCTGCCGCCCGACAAAGAAGAGGTAGGGCTGGTCGTGTTCAACCTGGCGAGTGTTACCATCTCTATCCCAGATGCATGCATGATGCTTTTTCTGACTATCAACTGCCAGAACTTTTAAGGACCCCATTACAGTCGCTGTGCTTGCAAATCAAGAGTCTACAACTTGGAAGTATATCGGAGTTCCTATCAAATGCATTGCAGCCACCAGAGCCTTTATCAGTTCAAAATGCCATAGATTATTTGAAGACAATTGGAGCTCTAGACGAGAAAGAAAATCTGACTGTTCTCGGGCAACACTTATCAGTTCTTCCAGTTGAGCCTAAACTTGGAAAAATGCTTATATTAGGAGCTATTTTCAACTGCCTCGATCCGATTATGACTATTGTTGCTGGTCTTAGTGTCAGAGATCCTTTTCTCTTGCCATCTGATAAGAAGGATTTAGCCGAATCAGCAAAAGCACAGTTCGCTGCACGTGCCTGCAGTGATCATCTTGCCCTAGTTCGAGCTTATGATGGTTGGAGAGATGCTGAAAGACAGCAATCCGGTTATGATTACTGTTGGAGAAACTTTCTCTCCATGCAAACTCTCAGAGCCATGGATTCTCTGAAGAAGCAGTTCTTCTTTTTGCTAAAAAATGCTGGCCTAGTTGATTTTGATGCAGAAAATTGCGATCACTCGAACCACGATGAGCATTTAATCCGTGCAGTCATTTGTGCTGGTTTGTTTCCCTCAATTTGCTCTGTTGTGAACAAAGAGAAATCAATAACTTTGAAAACAAGGGAAGATGGTCAGGTTATGCTATACTCGAACTCCGTTAATGCTACCTATCCAAAGATTCCCTACCCATGGCTGGTTTTTAATGAAAAGGTGAAAGTCAACTCAGTCTTCCTTCGAGATTCTACCGGTGTTTCGGACTCTGTCCTCCTTTTGTTCGGGGGACATGTTTCACGAGGAGGATTTGATGGTCACCTCAAAATGATGGATGGTTATTTGGAGTTTCTCATGAAACCTGCATTGGCAGAGACTTATTTAGGTCTTAAAAGGGAACTTGATGAGCTTGTTCATCAAAAACTTTTGAATCCAAAGTTAGATATGCAGCCACACAATGACCTACTGTCAGCGATAAGGTTGTTGGTGTCGGAGGATCACTGTGAGGGTAAGTTCGTCTTCGGTCGACATCTGCTCGCACCATCAAAAAAGACAACGACGGATGGTCTACCTCAACAGAAAAATGGTGAAGGAGCTGGGGGTGATAATTCCAAGAGCCGGCTTCAGACCATACTTCAAAAAGCTAAACATGGCATACCGAATTACGAAACCAAGCAGTTAAAAAACAACCAGTTCCGCTCCACCGTTATTTTCAACGGGATGAACTTTGTGGGCAAACCTTGTAGCAACAAGAAACTTGCAGAAAAAGATGCAGCTGCCGAGGCTCTGCTATGGCTACAGGGCGAGACACACTTGTCTTCCCCATCTATTGAACCATTGACAACATCGTTTCATAGTTCCAAATGGAGTTGA 3582 44.42 MAYSTIFNAYIIKPSISISFKPTSPSPFSKSSTRFFTRLLFRNLPMGFASFPSRPGPVSGARCAAQFKWVEVGSRENQQGSVGNVAFPFWQHRPCFNYGRLAYEDVSSDDSDVEFRSPPGRISSPTLDNVDEWRWKLTMLLRNNDEQEVVSREKKDRRDFDQLSALATRMGLHSRQYSKVIVFSKDPLPNYRPDLDDKRPQREVVIPLGVQREVEGQLRLYQSHKSGTRGCFSNGYLPKSSIVENSANNNGLFKHQEEPLTTQNVVMEKILRRKSLQLRNQCQDWQESPEGQKMMEFRKSLPAFKERETFLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRNLKGVSHVIIDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEMTGYRLTSYNQIDDYGQDKAWKMHKQAPAIKKRKTQIASSVEDAFEAADFSTYSPRTQESLSCWNPDSIGFNLIEHALSYIVERERPGAILVFMTGWDDINALKDQLQSHPLLGDPSKVLLLACHGSMASSEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDAINNTPCLLPTWISKAAARQRRGRAGRVQPGECYHLYPRCMHDAFSDYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGALDEKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLLPSDKKDLAESAKAQFAARACSDHLALVRAYDGWRDAERQQSGYDYCWRNFLSMQTLRAMDSLKKQFFFLLKNAGLVDFDAENCDHSNHDEHLIRAVICAGLFPSICSVVNKEKSITLKTREDGQVMLYSNSVNATYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGHVSRGGFDGHLKMMDGYLEFLMKPALAETYLGLKRELDELVHQKLLNPKLDMQPHNDLLSAIRLLVSEDHCEGKFVFGRHLLAPSKKTTTDGLPQQKNGEGAGGDNSKSRLQTILQKAKHGIPNYETKQLKNNQFRSTVIFNGMNFVGKPCSNKKLAEKDAAAEALLWLQGETHLSSPSIEPLTTSFHSSKWS 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2309288 2318564 + Sed0006886.1 Sed08g0382 722158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0382 1193 Gene3D - 559 719 IPR027417 -
Sed08g0382 1193 SMART ultradead3 299 492 IPR014001 -
Sed08g0382 1193 FunFam DExH-box ATP-dependent RNA helicase DExH3 254 479 - -
Sed08g0382 1193 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 420 429 IPR002464 -
Sed08g0382 1193 Gene3D - 1094 1174 - -
Sed08g0382 1193 Gene3D - 252 479 IPR027417 -
Sed08g0382 1193 PANTHER ATP-DEPENDENT RNA HELICASE 258 1095 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Sed08g0382 1193 Pfam Helicase associated domain (HA2), winged-helix 764 792 IPR048333 -
Sed08g0382 1193 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1106 1171 IPR014720 -
Sed08g0382 1193 CDD DEXHc_RHA-like 317 477 - -
Sed08g0382 1193 MobiDBLite consensus disorder prediction 1087 1108 - -
Sed08g0382 1193 MobiDBLite consensus disorder prediction 1088 1108 - -
Sed08g0382 1193 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 920 1002 IPR011709 -
Sed08g0382 1193 Gene3D - 743 848 - -
Sed08g0382 1193 SMART helicmild6 595 701 IPR001650 -
Sed08g0382 1193 Pfam DEAD/DEAH box helicase 310 463 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed08g0382 1193 Pfam Helicase associated domain (HA2), ratchet-like 793 853 - -
Sed08g0382 1193 Pfam Helicase conserved C-terminal domain 571 700 IPR001650 -
Sed08g0382 1193 FunFam DExH-box ATP-dependent RNA helicase DExH3 563 719 - -
Sed08g0382 1193 SMART ha2_5 763 854 IPR007502 -
Sed08g0382 1193 SMART DRBM_3 1107 1170 IPR014720 -
Sed08g0382 1193 Pfam Double-stranded RNA binding motif 1108 1169 IPR014720 -
Sed08g0382 1193 SUPERFAMILY dsRNA-binding domain-like 1105 1188 - -
Sed08g0382 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 862 IPR027417 -
Sed08g0382 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 311 478 IPR014001 -
Sed08g0382 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 567 741 IPR001650 -
Sed08g0382 1193 FunFam Putative ATP-dependent RNA helicase DHX36 743 847 - -
Sed08g0382 1193 CDD SF2_C_RHA 547 709 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0382 K14442 - - csv:101211075 1943.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1957 Sed-Chr6:43736574 Sed08g0382 Sed-Chr8:2309288 0.00E+00 dispersed
Sed08g0382 Sed-Chr8:2309288 Sed12g2097 Sed-Chr12:31694080 0.00E+00 dispersed
Sed12g2096 Sed-Chr12:31694080 Sed08g0382 Sed-Chr8:2309288 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70