Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0384 ATGGCCGAGCTCGATCCATCGAAGAAGGTGGCCGATAGATATTTAAAGCGTGAGATTCTCGGGGAGGGTACTTATGGTGTTGTCTACAAGGCCATTGATACTCAGACAGGTCAGATAGTTGCTATCAAGAAAATTCGCCTTGGGAAACAAAAAGAAGGGGTAAATTTTACGGCTCTTCGAGAAATCAAGCTACTTAAAGAGCTCAAAGATCCCAACATAATTGAGTTGATTGATGCATTCCCTCACAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAACATTTTTCTTTCCCCAGCTGACACAAAATCGTACCTTCAAATGACGTTGAAAGGCCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTGTTGATAGGACCAAATGGTCAATTGAAGCTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGGTTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCCGAACTACTACTCCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACGCCTTCCCAGTGGCCTGATATGTTATACTTACCTGATTATGTGGAGTTCCAATATGTTCCCGCACCACCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTTCTATCAAAGATGTTTGCTTATGATCCAAAATCTAGAATTTCCATTCAACAAGCATTGGAGCATAGGTACTTCACATCTGCACCATTTCCCACAGAACCTAGTAAGCTTCCAAGGCCTGCTTCAAAGCGCGAACCTATGAACTCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGGGTAATGCCAGAGCGCGAGGGTTTTGAAGGAAATGCATATAGAGCTGATAAACTTGATGACCATGCTAATGAGGTGCAAGAGGTAGCTGCTGGAAATACAAGCAAGAATGAAGAAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1251 42.05 MAELDPSKKVADRYLKREILGEGTYGVVYKAIDTQTGQIVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPFPTEPSKLPRPASKREPMNSRVSDLNSNEGPTVLSPPRKSRRVMPEREGFEGNAYRADKLDDHANEVQEVAAGNTSKNEEVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2325240 2330214 - Sed0022626.1 Sed08g0384 722160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0384 416 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Sed08g0384 416 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Sed08g0384 416 PANTHER CELL DIVISION PROTEIN KINASE 14 294 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Sed08g0384 416 MobiDBLite consensus disorder prediction 368 405 - -
Sed08g0384 416 FunFam Cyclin-dependent kinase D-1 5 94 - -
Sed08g0384 416 MobiDBLite consensus disorder prediction 296 342 - -
Sed08g0384 416 MobiDBLite consensus disorder prediction 317 332 - -
Sed08g0384 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Sed08g0384 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Sed08g0384 416 SMART serkin_6 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0384 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524(InterPro)
Sed08g0384 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0384 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Sed08g0384 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0384 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0384 Sed-Chr8:2325240 Sed12g2100 Sed-Chr12:31713756 5.20E-180 dispersed
Sed10g1387 Sed-Chr10:29779586 Sed08g0384 Sed-Chr8:2325240 2.20E-38 dispersed
Sed10g1388 Sed-Chr10:29779586 Sed08g0384 Sed-Chr8:2325240 2.20E-38 dispersed
Sed12g2099 Sed-Chr12:31713756 Sed08g0384 Sed-Chr8:2325240 2.90E-231 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79586 PF00069 Pkinase 3.20E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0384 K02202 - csv:101217645 793.497