Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0384 | ATGGCCGAGCTCGATCCATCGAAGAAGGTGGCCGATAGATATTTAAAGCGTGAGATTCTCGGGGAGGGTACTTATGGTGTTGTCTACAAGGCCATTGATACTCAGACAGGTCAGATAGTTGCTATCAAGAAAATTCGCCTTGGGAAACAAAAAGAAGGGGTAAATTTTACGGCTCTTCGAGAAATCAAGCTACTTAAAGAGCTCAAAGATCCCAACATAATTGAGTTGATTGATGCATTCCCTCACAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAACATTTTTCTTTCCCCAGCTGACACAAAATCGTACCTTCAAATGACGTTGAAAGGCCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTGTTGATAGGACCAAATGGTCAATTGAAGCTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGGTTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCCGAACTACTACTCCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACGCCTTCCCAGTGGCCTGATATGTTATACTTACCTGATTATGTGGAGTTCCAATATGTTCCCGCACCACCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTTCTATCAAAGATGTTTGCTTATGATCCAAAATCTAGAATTTCCATTCAACAAGCATTGGAGCATAGGTACTTCACATCTGCACCATTTCCCACAGAACCTAGTAAGCTTCCAAGGCCTGCTTCAAAGCGCGAACCTATGAACTCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGGGTAATGCCAGAGCGCGAGGGTTTTGAAGGAAATGCATATAGAGCTGATAAACTTGATGACCATGCTAATGAGGTGCAAGAGGTAGCTGCTGGAAATACAAGCAAGAATGAAGAAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA | 1251 | 42.05 | MAELDPSKKVADRYLKREILGEGTYGVVYKAIDTQTGQIVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPFPTEPSKLPRPASKREPMNSRVSDLNSNEGPTVLSPPRKSRRVMPEREGFEGNAYRADKLDDHANEVQEVAAGNTSKNEEVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2325240 | 2330214 | - | Sed0022626.1 | Sed08g0384 | 722160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0384 | 416 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 94 | - | - | |
Sed08g0384 | 416 | FunFam | Putative cyclin-dependent kinase 7 | 95 | 310 | - | - | |
Sed08g0384 | 416 | PANTHER | CELL DIVISION PROTEIN KINASE | 14 | 294 | IPR050108 | GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER) | |
Sed08g0384 | 416 | MobiDBLite | consensus disorder prediction | 368 | 405 | - | - | |
Sed08g0384 | 416 | FunFam | Cyclin-dependent kinase D-1 | 5 | 94 | - | - | |
Sed08g0384 | 416 | MobiDBLite | consensus disorder prediction | 296 | 342 | - | - | |
Sed08g0384 | 416 | MobiDBLite | consensus disorder prediction | 317 | 332 | - | - | |
Sed08g0384 | 416 | Gene3D | Transferase(Phosphotransferase) domain 1 | 95 | 310 | - | - | |
Sed08g0384 | 416 | SUPERFAMILY | Protein kinase-like (PK-like) | 10 | 301 | IPR011009 | - | |
Sed08g0384 | 416 | SMART | serkin_6 | 14 | 294 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0384 | 416 | ProSitePatterns | Protein kinases ATP-binding region signature. | 20 | 44 | IPR017441 | GO:0005524(InterPro) | |
Sed08g0384 | 416 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 132 | 144 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0384 | 416 | CDD | STKc_CDK7 | 13 | 307 | IPR037770 | GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro) | |
Sed08g0384 | 416 | ProSiteProfiles | Protein kinase domain profile. | 14 | 294 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0384 | 416 | Pfam | Protein kinase domain | 16 | 294 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0384 | Sed-Chr8:2325240 | Sed12g2100 | Sed-Chr12:31713756 | 5.20E-180 | dispersed | |
Sed10g1387 | Sed-Chr10:29779586 | Sed08g0384 | Sed-Chr8:2325240 | 2.20E-38 | dispersed | |
Sed10g1388 | Sed-Chr10:29779586 | Sed08g0384 | Sed-Chr8:2325240 | 2.20E-38 | dispersed | |
Sed12g2099 | Sed-Chr12:31713756 | Sed08g0384 | Sed-Chr8:2325240 | 2.90E-231 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79586 | PF00069 | Pkinase | 3.20E-72 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0384 | K02202 | - | csv:101217645 | 793.497 |