Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0385 ATGCAAAGATCATCACCAACAATGGGAGAGGTAAAGATTATTGGATCAGCTGCAAGCCTCTTCTGTGTAAGGGTTGAATGGGCTTTGAAGCTCAAAGGAATTGAGTATGAGTACATAGCTGAAGACTTGAGAAACAAAAGTGAGCTGCTTCTCAAGTCCAACCCTGTGCTTAAGAAAGTACCTGTGCTCTTGCACAATGGCAAAGCCATCTCCGAGTCGCTTCTCATACTCGAATACATCGACGAGACGTGGAAGGAGAACCCGATCATGCCTGAGGATCCGTATGACAGAGCCATGGCTCGCTTCTGGGCTAAGTTTTTAGATGAGAAGGGCGTGTTCGGCGCTTGGGAAGCTTTCCAGGCTGAAGGAGAAGAGAAGGAAAAGGCTGTGGAGGCTGCAATACAAAATTTGGCACTGCTTGACAAAGAAATTCAAGGAAAAAAATTCTTTGGTGGAGAGCAAATTGGTTACCTGGATATAGCTGCAGGTTGGTTGTGCCTCTGGCTCAATGTTCTTGATGAAGTTGGAGAAATGAAGGTGTTTGACAAAGAAAGGGTGCCATCCCTTCATGAATGGGCTCAAAACTTCATCCACATCCCAGTTATCAGAGAATCCCTTCCACCCAGAGAAACTCTTGTCGATTACTTCAACAGGAGTCTGATCTACGTCCGGTCGTTAGCTGCAAATAAGCAATAG 696 45.69 MQRSSPTMGEVKIIGSAASLFCVRVEWALKLKGIEYEYIAEDLRNKSELLLKSNPVLKKVPVLLHNGKAISESLLILEYIDETWKENPIMPEDPYDRAMARFWAKFLDEKGVFGAWEAFQAEGEEKEKAVEAAIQNLALLDKEIQGKKFFGGEQIGYLDIAAGWLCLWLNVLDEVGEMKVFDKERVPSLHEWAQNFIHIPVIRESLPPRETLVDYFNRSLIYVRSLAANKQ 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2332067 2335053 + Sed0005841.1 Sed08g0385 722161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0385 231 Gene3D - 93 223 - -
Sed08g0385 231 Pfam Glutathione S-transferase, C-terminal domain 126 193 - -
Sed08g0385 231 Pfam Glutathione S-transferase, N-terminal domain 21 82 IPR004045 -
Sed08g0385 231 CDD GST_N_Tau 11 84 - -
Sed08g0385 231 SUPERFAMILY Thioredoxin-like 11 109 IPR036249 -
Sed08g0385 231 Gene3D Glutaredoxin 6 92 - -
Sed08g0385 231 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 10 217 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed08g0385 231 SUPERFAMILY GST C-terminal domain-like 82 218 IPR036282 -
Sed08g0385 231 FunFam Tau class glutathione S-transferase 6 92 - -
Sed08g0385 231 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 9 88 IPR004045 -
Sed08g0385 231 SFLD Main (cytGST) 8 219 - -
Sed08g0385 231 SFLD Main.3: Omega- and Tau-like 8 219 IPR045073 -
Sed08g0385 231 CDD GST_C_Tau 94 217 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed08g0385 231 FunFam Tau class glutathione S-transferase 90 225 - -
Sed08g0385 231 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 215 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0385 K00799 - - csv:101217418 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0385 Sed-Chr8:2332067 Sed12g0281 Sed-Chr12:1606834 1.10E-57 dispersed
Sed08g0385 Sed-Chr8:2332067 Sed02g1454 Sed-Chr2:50600853 2.80E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25