Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0394 ATGGCTGGTGGTGATCAAGATATGGCTGTTCACTCTCTTGGTTCTAAAGTTTCTCTAGTTTCAGATCATGAAGTACTTGATAAAAAATGTGGTAACATTAATGCCAATCACCAACAAAAGCCTTGCTTTGATCCTTCTTTTCTTTCTTCTCCCAAGGCTGTGCTTCCGATTTCCGTGGCGGCGGAGAGTGATCAAGCTCTTCGTCGACCTCGGGGGCGGCCTGCTGGGTCCAAAAACAAGCCGAAACCCCCTATTATTGTTACTCGAGATAGTGCCAATGCTCTCCGAGCTCATGCCATTGAGGTCAGCTCTGGTTGTGATGTCAATGAGAGCCTTTCTAACTTTGCGCGGAGGAAGCAGCGCGGCGTTTGTATACTTAGTGGGAGCGGGTGCGTCACTAATGTCACACTTCGCCAAGCTGCCTCCTCTGGTGCTATTGTTACTCTTCATGGACGCTTCGAGATTCTGTCGTTGCTGGGATCGATCTTGCCGCCGCCAGCGCCGTCAGGGATAACCGGTCTAACAATTTACTTGGCCGGTCCACAAGGGCAAGTGGTCGGCGGTTCAGTGGTGGGAGCGCTCATTGCGTCCGGTCCGGTTGTGATCATGGCGGCGACGTTCATGAATGCAACATTCGACCGGCTGCCGTCGGACGACGACGAAGCGGCGGCCGCCGCCGCCATGCAGGGCCAACACTACGGCCAAAACGGGCGGAGCCACCACCATCTGGATGTTTCCGATCTGTATGGAGTGCCACAGAACTTGATCGGCAATACCACGCTTCCGCCGGAATTGTATTCTTGGGCGGCCGGCAGAACCATGTCGAAGACTTAA 834 53.72 MAGGDQDMAVHSLGSKVSLVSDHEVLDKKCGNINANHQQKPCFDPSFLSSPKAVLPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSLLGSILPPPAPSGITGLTIYLAGPQGQVVGGSVVGALIASGPVVIMAATFMNATFDRLPSDDDEAAAAAAMQGQHYGQNGRSHHHLDVSDLYGVPQNLIGNTTLPPELYSWAAGRTMSKT 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2381718 2383774 - Sed0021416.1 Sed08g0394 722170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0394 277 MobiDBLite consensus disorder prediction 63 84 - -
Sed08g0394 277 FunFam AT-hook motif nuclear-localized protein 95 222 - -
Sed08g0394 277 CDD DUF296 96 207 IPR005175 -
Sed08g0394 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 62 239 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed08g0394 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 208 IPR005175 -
Sed08g0394 277 ProSiteProfiles PPC domain profile profile. 92 229 IPR005175 -
Sed08g0394 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 222 - -
Sed08g0394 277 Gene3D - 95 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0394 Sed-Chr8:2381718 Sed08g1584 Sed-Chr8:30942651 3.00E-59 dispersed
Sed12g2108 Sed-Chr12:31776752 Sed08g0394 Sed-Chr8:2381718 5.60E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0394 - - - 0.0