Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0397 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCTTCTTCCTCTAATTTTGCTCCTAATTCTGATCTTAATCACCCCAATAATCATAACCTTCATTATGTTGATAATGGCGAAAAGGGTAATCATCAGAATCAATTGTTGAGTAGCGATCAATCGTCTGAACGAAAACGTCTACGGAAACAACCCCATCTCGAGGAGGAGGAGGACGACGATCTTGATTACTCTGTATTGAAGCTAATCAAAGTTCCTAAGCGGATTAACCAGTTCAGAGCTCCTCTTCCTGCTTTAATGGAGTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGGCAACAGATATCAGGTTCAAGAAATAATTGGTAAAGGAAGCTATGGGATTGTCGGTTCCGCCATTGATACCCATACTGATGAGAAGGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTTCTACGGTTGCTCCGTCATCCGGATATAGTAGAAATAAAGCACATTATGCTTCCTCCGTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCTAACGATGATCTCACTCCTGAGCATCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACACACAGCAAATGTATTTCATCGTGATTTAAAGCCGAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTTTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAGGCCGCTATTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTCATGACTGATGTGCTTGGCACGCCTTCGGCTGAGTCGATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGTAATATGAGGAGAAAGCACCCTGTTTCTCTCACACATAAGTTCCCGAAAGCCGATCCGTTGGCTCTCCGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCTACAGCTGAAGAGGCATTAACCGATCCTTACTTTAATGGTTTGGCCAGCGTGGATCGGGAACCATCTACTTACCCGATTTCAAAACTCGAGTTTGAGTTTGAGAGAAGAAAGTTGGCAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTGCAGGAATATCTCCGCAGTGGAGAACAGACCAGTTTCATGTACCCAAGTGGTGTTGATCGTTTCAAACGCCAATTCGCTCACCTGGAGGAACATTATGGTAAGGGTGAAAAAAGTTCTCCTCTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTCCACCCAAAGCTGAGGTTGCAGAGCACAATAATTTAGAAGGAAGAAATGGTGCATATGTTGCTACATCTCGTGAGAGTCCCCCAAGGTCACAGCAGGGTGACGGTTTGGAAAATGCAAACGGTAACGAACAAAATGGACAAAACAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTTCAACCAAACAAGGACGAGGACCTAGAGGAGGAAGAAGAATCGATCACGGAGACCAACAACGAGGCCGTTGACGAGTTGTCTCATAAGGCATCAGCCTTGCATACTTGA 1887 42.82 MGSGTLVDGVRRWFQRRTSSSSSSSNFAPNSDLNHPNNHNLHYVDNGEKGNHQNQLLSSDQSSERKRLRKQPHLEEEEDDDLDYSVLKLIKVPKRINQFRAPLPALMESHKKGGLETEFFTEYGEGNRYQVQEIIGKGSYGIVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKHPVSLTHKFPKADPLALRLLQRLLAFDPKDRPTAEEALTDPYFNGLASVDREPSTYPISKLEFEFERRKLAKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGEKSSPLQRQHASLPRERVCPPKAEVAEHNNLEGRNGAYVATSRESPPRSQQGDGLENANGNEQNGQNKPNYSARSLLKSASISASKCIGVQPNKDEDLEEEEESITETNNEAVDELSHKASALHT 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2389941 2400964 - Sed0022940.1 Sed08g0397 722173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0397 628 FunFam Mitogen-activated protein kinase 444 466 - -
Sed08g0397 628 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 126 461 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed08g0397 628 SUPERFAMILY Protein kinase-like (PK-like) 125 424 IPR011009 -
Sed08g0397 628 MobiDBLite consensus disorder prediction 545 591 - -
Sed08g0397 628 ProSitePatterns Protein kinases ATP-binding region signature. 135 159 IPR017441 GO:0005524(InterPro)
Sed08g0397 628 MobiDBLite consensus disorder prediction 47 61 - -
Sed08g0397 628 MobiDBLite consensus disorder prediction 17 77 - -
Sed08g0397 628 Gene3D Transferase(Phosphotransferase) domain 1 215 443 - -
Sed08g0397 628 FunFam Mitogen-activated protein kinase 215 443 - -
Sed08g0397 628 Coils Coil 598 618 - -
Sed08g0397 628 CDD STKc_TDY_MAPK 128 465 - -
Sed08g0397 628 Pfam Protein kinase domain 129 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0397 628 MobiDBLite consensus disorder prediction 62 76 - -
Sed08g0397 628 ProSitePatterns MAP kinase signature. 164 267 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0397 628 MobiDBLite consensus disorder prediction 17 41 - -
Sed08g0397 628 SMART serkin_6 129 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0397 628 FunFam Mitogen-activated protein kinase 118 223 - -
Sed08g0397 628 ProSiteProfiles Protein kinase domain profile. 129 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0397 628 MobiDBLite consensus disorder prediction 518 532 - -
Sed08g0397 628 MobiDBLite consensus disorder prediction 598 612 - -
Sed08g0397 628 Gene3D Phosphorylase Kinase; domain 1 145 466 - -
Sed08g0397 628 MobiDBLite consensus disorder prediction 499 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0397 Sed-Chr8:2389941 Sed13g0648 Sed-Chr13:4381399 9.60E-178 dispersed
Sed08g0397 Sed-Chr8:2389941 Sed08g0398 Sed-Chr8:2389941 0.00E+00 tandem
Sed01g1760 Sed-Chr1:12815884 Sed08g0397 Sed-Chr8:2389941 1.10E-195 wgd
Sed12g2110 Sed-Chr12:31783363 Sed08g0397 Sed-Chr8:2389941 1.40E-275 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79587 PF00069 Pkinase 8.50E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0397 - - - 0.0