Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0397 | ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCTTCTTCCTCTAATTTTGCTCCTAATTCTGATCTTAATCACCCCAATAATCATAACCTTCATTATGTTGATAATGGCGAAAAGGGTAATCATCAGAATCAATTGTTGAGTAGCGATCAATCGTCTGAACGAAAACGTCTACGGAAACAACCCCATCTCGAGGAGGAGGAGGACGACGATCTTGATTACTCTGTATTGAAGCTAATCAAAGTTCCTAAGCGGATTAACCAGTTCAGAGCTCCTCTTCCTGCTTTAATGGAGTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGGCAACAGATATCAGGTTCAAGAAATAATTGGTAAAGGAAGCTATGGGATTGTCGGTTCCGCCATTGATACCCATACTGATGAGAAGGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTTCTACGGTTGCTCCGTCATCCGGATATAGTAGAAATAAAGCACATTATGCTTCCTCCGTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCTAACGATGATCTCACTCCTGAGCATCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACACACAGCAAATGTATTTCATCGTGATTTAAAGCCGAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTTTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAGGCCGCTATTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTCATGACTGATGTGCTTGGCACGCCTTCGGCTGAGTCGATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGTAATATGAGGAGAAAGCACCCTGTTTCTCTCACACATAAGTTCCCGAAAGCCGATCCGTTGGCTCTCCGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCTACAGCTGAAGAGGCATTAACCGATCCTTACTTTAATGGTTTGGCCAGCGTGGATCGGGAACCATCTACTTACCCGATTTCAAAACTCGAGTTTGAGTTTGAGAGAAGAAAGTTGGCAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTGCAGGAATATCTCCGCAGTGGAGAACAGACCAGTTTCATGTACCCAAGTGGTGTTGATCGTTTCAAACGCCAATTCGCTCACCTGGAGGAACATTATGGTAAGGGTGAAAAAAGTTCTCCTCTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTCCACCCAAAGCTGAGGTTGCAGAGCACAATAATTTAGAAGGAAGAAATGGTGCATATGTTGCTACATCTCGTGAGAGTCCCCCAAGGTCACAGCAGGGTGACGGTTTGGAAAATGCAAACGGTAACGAACAAAATGGACAAAACAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTTCAACCAAACAAGGACGAGGACCTAGAGGAGGAAGAAGAATCGATCACGGAGACCAACAACGAGGCCGTTGACGAGTTGTCTCATAAGGCATCAGCCTTGCATACTTGA | 1887 | 42.82 | MGSGTLVDGVRRWFQRRTSSSSSSSNFAPNSDLNHPNNHNLHYVDNGEKGNHQNQLLSSDQSSERKRLRKQPHLEEEEDDDLDYSVLKLIKVPKRINQFRAPLPALMESHKKGGLETEFFTEYGEGNRYQVQEIIGKGSYGIVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKHPVSLTHKFPKADPLALRLLQRLLAFDPKDRPTAEEALTDPYFNGLASVDREPSTYPISKLEFEFERRKLAKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGEKSSPLQRQHASLPRERVCPPKAEVAEHNNLEGRNGAYVATSRESPPRSQQGDGLENANGNEQNGQNKPNYSARSLLKSASISASKCIGVQPNKDEDLEEEEESITETNNEAVDELSHKASALHT | 628 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2389941 | 2400964 | - | Sed0022940.1 | Sed08g0397 | 722173 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0397 | 628 | FunFam | Mitogen-activated protein kinase | 444 | 466 | - | - | |
Sed08g0397 | 628 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 126 | 461 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed08g0397 | 628 | SUPERFAMILY | Protein kinase-like (PK-like) | 125 | 424 | IPR011009 | - | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 545 | 591 | - | - | |
Sed08g0397 | 628 | ProSitePatterns | Protein kinases ATP-binding region signature. | 135 | 159 | IPR017441 | GO:0005524(InterPro) | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 17 | 77 | - | - | |
Sed08g0397 | 628 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 443 | - | - | |
Sed08g0397 | 628 | FunFam | Mitogen-activated protein kinase | 215 | 443 | - | - | |
Sed08g0397 | 628 | Coils | Coil | 598 | 618 | - | - | |
Sed08g0397 | 628 | CDD | STKc_TDY_MAPK | 128 | 465 | - | - | |
Sed08g0397 | 628 | Pfam | Protein kinase domain | 129 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 62 | 76 | - | - | |
Sed08g0397 | 628 | ProSitePatterns | MAP kinase signature. | 164 | 267 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 17 | 41 | - | - | |
Sed08g0397 | 628 | SMART | serkin_6 | 129 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0397 | 628 | FunFam | Mitogen-activated protein kinase | 118 | 223 | - | - | |
Sed08g0397 | 628 | ProSiteProfiles | Protein kinase domain profile. | 129 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 518 | 532 | - | - | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 598 | 612 | - | - | |
Sed08g0397 | 628 | Gene3D | Phosphorylase Kinase; domain 1 | 145 | 466 | - | - | |
Sed08g0397 | 628 | MobiDBLite | consensus disorder prediction | 499 | 628 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0397 | Sed-Chr8:2389941 | Sed13g0648 | Sed-Chr13:4381399 | 9.60E-178 | dispersed | |
Sed08g0397 | Sed-Chr8:2389941 | Sed08g0398 | Sed-Chr8:2389941 | 0.00E+00 | tandem | |
Sed01g1760 | Sed-Chr1:12815884 | Sed08g0397 | Sed-Chr8:2389941 | 1.10E-195 | wgd | |
Sed12g2110 | Sed-Chr12:31783363 | Sed08g0397 | Sed-Chr8:2389941 | 1.40E-275 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79587 | PF00069 | Pkinase | 8.50E-68 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0397 | - | - | - | 0.0 |