Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0398 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCTTCTTCCTCTAATTTTGCTCCTAATTCTGATCTTAATCACCCCAATAATCATAACCTTCATTATGTTGATAATGGCGAAAAGGGTAATCATCAGAATCAATTGTTGAGTAGCGATCAATCGTCTGAACGAAAACGTCTACGGAAACAACCCCATCTCGAGGAGGAGGAGGACGACGATCTTGATTACTCTGTATTGAAGCTAATCAAAGTTCCTAAGCGGATTAACCAGTTCAGAGCTCCTCTTCCTGCTTTAATGGAGTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGGCAACAGATATCAGGTTCAAGAAATAATTGGTAAAGGAAGCTATGGGATTGTCGGTTCCGCCATTGATACCCATACTGATGAGAAGGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTTCTACGGTTGCTCCGTCATCCGGATATAGTAGAAATAAAGCACATTATGCTTCCTCCGTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCTAACGATGATCTCACTCCTGAGCATCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACACACAGCAAATGTATTTCATCGTGATTTAAAGCCGAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTTTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAGGCCGCTATTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTCATGACTGATGTGCTTGGCACGCCTTCGGCTGAGTCGATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGTAATATGAGGAGAAAGCACCCTGTTTCTCTCACACATAAGTTCCCGAAAGCCGATCCGTTGGCTCTCCGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCTACAGCTGAAGAGATCTTGGAGTATCATCCTCAGATGCTGCAGGAATATCTCCGCAGTGGAGAACAGACCAGTTTCATGTACCCAAGTGGTGTTGATCGTTTCAAACGCCAATTCGCTCACCTGGAGGAACATTATGGTAAGGGTGAAAAAAGTTCTCCTCTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTCCACCCAAAGCTGAGGTTGCAGAGCACAATAATTTAGAAGGAAGAAATGGTGCATATGTTGCTACATCTCGTGAGAGTCCCCCAAGGTCACAGCAGGGTGACGGTTTGGAAAATGCAAACGGTAACGAACAAAATGGACAAAACAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTTCAACCAAACAAGGACGAGGACCTAGAGGAGGAAGAAGAATCGATCACGGAGACCAACAACGAGGCCGTTGACGAGTTGTCTCATAAGGCATCAGCCTTGCATACTTGA 1749 43.05 MGSGTLVDGVRRWFQRRTSSSSSSSNFAPNSDLNHPNNHNLHYVDNGEKGNHQNQLLSSDQSSERKRLRKQPHLEEEEDDDLDYSVLKLIKVPKRINQFRAPLPALMESHKKGGLETEFFTEYGEGNRYQVQEIIGKGSYGIVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKHPVSLTHKFPKADPLALRLLQRLLAFDPKDRPTAEEILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGEKSSPLQRQHASLPRERVCPPKAEVAEHNNLEGRNGAYVATSRESPPRSQQGDGLENANGNEQNGQNKPNYSARSLLKSASISASKCIGVQPNKDEDLEEEEESITETNNEAVDELSHKASALHT 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2389941 2400964 - Sed0022940.2 Sed08g0398 722174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0398 582 Gene3D Phosphorylase Kinase; domain 1 127 212 - -
Sed08g0398 582 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 126 433 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed08g0398 582 ProSitePatterns Protein kinases ATP-binding region signature. 135 159 IPR017441 GO:0005524(InterPro)
Sed08g0398 582 Gene3D Transferase(Phosphotransferase) domain 1 213 419 - -
Sed08g0398 582 FunFam Mitogen-activated protein kinase 215 431 - -
Sed08g0398 582 MobiDBLite consensus disorder prediction 47 61 - -
Sed08g0398 582 MobiDBLite consensus disorder prediction 17 77 - -
Sed08g0398 582 MobiDBLite consensus disorder prediction 453 582 - -
Sed08g0398 582 SMART serkin_6 129 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0398 582 MobiDBLite consensus disorder prediction 499 545 - -
Sed08g0398 582 MobiDBLite consensus disorder prediction 62 76 - -
Sed08g0398 582 MobiDBLite consensus disorder prediction 472 486 - -
Sed08g0398 582 MobiDBLite consensus disorder prediction 552 566 - -
Sed08g0398 582 ProSitePatterns MAP kinase signature. 164 267 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0398 582 MobiDBLite consensus disorder prediction 17 41 - -
Sed08g0398 582 FunFam Mitogen-activated protein kinase 118 223 - -
Sed08g0398 582 Coils Coil 552 572 - -
Sed08g0398 582 ProSiteProfiles Protein kinase domain profile. 129 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0398 582 Pfam Protein kinase domain 129 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0398 582 SUPERFAMILY Protein kinase-like (PK-like) 125 416 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0398 Sed-Chr8:2389941 Sed12g2110 Sed-Chr12:31783363 1.90E-241 dispersed
Sed08g0397 Sed-Chr8:2389941 Sed08g0398 Sed-Chr8:2389941 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79588 PF00069 Pkinase 1.40E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0398 - - - 0.0