Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0403 | ATGCATACACCATCGCCGTTGCCGAGGAGCGGTGGCGGATTAGTGCTAATGGAGAATCTGATCGGACTTCTCCGCGTTCGCATCGTTCGTGGCGTCAATCTCGCCGTTCGCGATGTTCGCACCAGCGATCCCTACGTCGTCGTCAAGATGGGAAAGCAAAAATTGAAGACGCGGGTGATAAAGAAGGATGTCAATCCTGTATGGAATGAAGATCTAACTCTTTCTATCATTGACCCGAATCTTCCTATTAAACTGACTGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTTGATATCAAACCATTTATGGAGGCTCTGAAGATTAACTTGAGAAGTCTTCCGAGCGGAACGACAATCTCGCGAATGCTACCGAGCCTGCAAAACTGTCTTGCTGAAGAGAGCTTTATCTTCTGGAAAGATGGTAAAGTTATCCAAGATATCTACCTTAGATTGAAAAATGTCGAATGCGGGGAAGTCGAAATCCAGTTGCAGTGGATTGATCTTCCAAAACCCAAAGGCTAA | 543 | 45.12 | MHTPSPLPRSGGGLVLMENLIGLLRVRIVRGVNLAVRDVRTSDPYVVVKMGKQKLKTRVIKKDVNPVWNEDLTLSIIDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKPFMEALKINLRSLPSGTTISRMLPSLQNCLAEESFIFWKDGKVIQDIYLRLKNVECGEVEIQLQWIDLPKPKG | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2449594 | 2452679 | - | Sed0009883.1 | Sed08g0403 | 722179 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0403 | 180 | ProSiteProfiles | C2 domain profile. | 3 | 119 | IPR000008 | - | |
Sed08g0403 | 180 | CDD | C2_ArfGAP | 21 | 164 | - | - | |
Sed08g0403 | 180 | Gene3D | C2 domain | 17 | 179 | IPR035892 | - | |
Sed08g0403 | 180 | Pfam | C2 domain | 22 | 109 | IPR000008 | - | |
Sed08g0403 | 180 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 17 | 178 | IPR044562 | - | |
Sed08g0403 | 180 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 22 | 167 | IPR035892 | - | |
Sed08g0403 | 180 | SMART | C2_3c | 23 | 118 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0403 | Sed-Chr8:2449594 | Sed08g2759 | Sed-Chr8:39246157 | 5.20E-68 | dispersed | |
Sed01g1771 | Sed-Chr1:12954990 | Sed08g0403 | Sed-Chr8:2449594 | 1.10E-65 | wgd | |
Sed12g2119 | Sed-Chr12:31868325 | Sed08g0403 | Sed-Chr8:2449594 | 1.20E-79 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0403 | - | - | - | 0.0 |