Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0403 ATGCATACACCATCGCCGTTGCCGAGGAGCGGTGGCGGATTAGTGCTAATGGAGAATCTGATCGGACTTCTCCGCGTTCGCATCGTTCGTGGCGTCAATCTCGCCGTTCGCGATGTTCGCACCAGCGATCCCTACGTCGTCGTCAAGATGGGAAAGCAAAAATTGAAGACGCGGGTGATAAAGAAGGATGTCAATCCTGTATGGAATGAAGATCTAACTCTTTCTATCATTGACCCGAATCTTCCTATTAAACTGACTGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTTGATATCAAACCATTTATGGAGGCTCTGAAGATTAACTTGAGAAGTCTTCCGAGCGGAACGACAATCTCGCGAATGCTACCGAGCCTGCAAAACTGTCTTGCTGAAGAGAGCTTTATCTTCTGGAAAGATGGTAAAGTTATCCAAGATATCTACCTTAGATTGAAAAATGTCGAATGCGGGGAAGTCGAAATCCAGTTGCAGTGGATTGATCTTCCAAAACCCAAAGGCTAA 543 45.12 MHTPSPLPRSGGGLVLMENLIGLLRVRIVRGVNLAVRDVRTSDPYVVVKMGKQKLKTRVIKKDVNPVWNEDLTLSIIDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKPFMEALKINLRSLPSGTTISRMLPSLQNCLAEESFIFWKDGKVIQDIYLRLKNVECGEVEIQLQWIDLPKPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2449594 2452679 - Sed0009883.1 Sed08g0403 722179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0403 180 ProSiteProfiles C2 domain profile. 3 119 IPR000008 -
Sed08g0403 180 CDD C2_ArfGAP 21 164 - -
Sed08g0403 180 Gene3D C2 domain 17 179 IPR035892 -
Sed08g0403 180 Pfam C2 domain 22 109 IPR000008 -
Sed08g0403 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 178 IPR044562 -
Sed08g0403 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 167 IPR035892 -
Sed08g0403 180 SMART C2_3c 23 118 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0403 Sed-Chr8:2449594 Sed08g2759 Sed-Chr8:39246157 5.20E-68 dispersed
Sed01g1771 Sed-Chr1:12954990 Sed08g0403 Sed-Chr8:2449594 1.10E-65 wgd
Sed12g2119 Sed-Chr12:31868325 Sed08g0403 Sed-Chr8:2449594 1.20E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0403 - - - 0.0