Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0406 ATGAGAAGATCTTCCCCAATCGCCGCATCCTTTCTCTCCCGTTCAATCTGCACCTCTCATGGCACCCTTTCCGACGCCGCCGCCGCCGCCTCCAATCACCGCCTTCTCCAAGCCGCTCTCTTCAGTTCCGCCACCGCCGGCGCCTCCAGCTCCCACCGGAGGCGGTGGTTCTCTTCCCTCCTCGACTCCGTCACCGGTGCCAGAGCGGCTTCGCTCGGCGTCGTTGGGGCCGTTGCTTCTCTAGCCGCTGCCCTGTCCATGTCCCAGGAGGTTCATGCGAAGGAGCCCTTGCCGCAGGATTTGGTTCCCAAGGAAGTCGTGCTCTATCAATACGAAGCGTGTCCGTTTTGCAATAAAGTTAAAGCTTTTCTTGACTACTACGATGTACCTTACAAAGTTGTGGAGGTCAATCCATTTAGTAAGAAGGAAATTAAATGGTCGGAATATAAGAAGGTGCCAATATTGGTGGTTGATGGCGAACAGTTGGTTGACTCCTCAGCCATTATCGACCAGTTGAGCCACAAGGTTTTGTTGGATAAGAAAAATGCTTCTTCCTTGTCTGGAGATGACGAAGAAACAAAGTGGCGCGGATGGGTAGATAATCACTTGGTACATGTCTTATCGCCAAACATATACCGAAATACTTCTGAAGCCCTTGAATCATTTGACTACATTGCTAGTAATGGTAATTTTGGCTTTGCTGAAAAGATAACTGTAAAGTATGCTGGAGCTGCCGCGATGTACTTCGTGTCTAAGAAATTAAAGAAGAAATATAATATTACTGATGAGCGCACAGCCTTATATGATGCAGCAGAAACGTGGGTAGATGCTTTGAATGGAAGGGATTTCCTAGGAGGCTCAAAACCTAATCTAGCCGATCTTGCGGTGTTCGGGGTCTTACGACCCATCCGTTACTTGAGGTCGGGTAAAGACATGGTGGAGCACACACGTATTGGTGAATGGTACACCAGAATGGAGAGCACTGTTGGGGACTCCTCCAGGATCAGATCCTAA 1014 49.31 MRRSSPIAASFLSRSICTSHGTLSDAAAAASNHRLLQAALFSSATAGASSSHRRRWFSSLLDSVTGARAASLGVVGAVASLAAALSMSQEVHAKEPLPQDLVPKEVVLYQYEACPFCNKVKAFLDYYDVPYKVVEVNPFSKKEIKWSEYKKVPILVVDGEQLVDSSAIIDQLSHKVLLDKKNASSLSGDDEETKWRGWVDNHLVHVLSPNIYRNTSEALESFDYIASNGNFGFAEKITVKYAGAAAMYFVSKKLKKKYNITDERTALYDAAETWVDALNGRDFLGGSKPNLADLAVFGVLRPIRYLRSGKDMVEHTRIGEWYTRMESTVGDSSRIRS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2458973 2463485 - Sed0005025.1 Sed08g0406 722182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0406 337 CDD GST_C_mPGES2 189 330 IPR034335 -
Sed08g0406 337 SUPERFAMILY Thioredoxin-like 105 180 IPR036249 -
Sed08g0406 337 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 104 180 IPR004045 -
Sed08g0406 337 ProSitePatterns Glutaredoxin active site. 108 124 IPR011767 -
Sed08g0406 337 SUPERFAMILY GST C-terminal domain-like 188 329 IPR036282 -
Sed08g0406 337 Gene3D - 187 335 - -
Sed08g0406 337 SFLD Prostaglandin E synthase like 38 335 - -
Sed08g0406 337 Gene3D Glutaredoxin 99 178 - -
Sed08g0406 337 ProSiteProfiles Glutaredoxin domain profile. 94 193 - -
Sed08g0406 337 SFLD Prostaglandin E synthase like.1 38 335 IPR034334 GO:0050220(InterPro)
Sed08g0406 337 Pfam Glutathione S-transferase, N-terminal domain 108 175 IPR004045 -
Sed08g0406 337 Pfam Glutathione S-transferase, C-terminal domain 256 327 IPR004046 -
Sed08g0406 337 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 23 336 - GO:0005739(PANTHER)|GO:0050220(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0406 K05309 - - csv:101221439 530.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1103 Sed-Chr11:26724389 Sed08g0406 Sed-Chr8:2458973 2.90E-98 transposed
Sed12g2122 Sed-Chr12:31893197 Sed08g0406 Sed-Chr8:2458973 1.00E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72