Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0408 ATGTCAGCTCGAAATTTCTTACACTTCCGCGCTGCAATCTCACAAGCTACATCCAGAGCCCTATCGCCAATCTTCCCCAGAAGATTCCCGCCAAATCTCACATCCATCGTCAACTGCAGCTCTTCAACAGCAATCGATTCCGCCGACAGCGGCGGCGTTGATGCTCCTCAGCCACACTCCAGCCTCATTCACCACCCCTGGCCTGAATGGGTTTCCTTCGTCAACGGCCTGAAGAGCAAAGGTTACTTGCGCGAACCTGCTTCAGAAGACGCGAACGGAGATGAGACCGGCGGCGATGCTGCCGCGCCTTTCGAGACTGATTACAAGGATATGTACTTGATGAAGCAGGCTTTCCTTAGCTTTGCGCGCGATCGCTACGATGTTTTCCAATCATTGTCCACAGATGATATTCGAACGGTTGTGAAGGATGGATGTCCCAATCTCTTCCGGAAATTTATCAACTCATCTAAAAGGTTGAGGGCTTATGTGCAACTGGATGAAGCCGATGTTTGTAGTGCTTGCAATCTTCGAGGCGCCTGTGATAGAGCTTATGTTATTTTAATGGAAACAGAAGCAACTGCGAGAACGGTGGATATAGCTCGATTATTGTTGACCTATGCATTGGACCCACTTGTTTTGTCTGGAGGGGACAAACCAATGGGTAGAGAGAATGTCGAAGTCTCTGTGAGGAAATTGCTTTCTGAGCTATCTGAACTGAGTAAAACACCCCTTGACGAAGCAGCAGGGAGGACCGATATGACAACTCCTACAAGGAAAGAAAAACCATCAAAACTTACAAATGATGCATTGACCAAAGATGTTGAGATGAAAAGAGGAGATTGGATGTGTACAAAGTGCAATTTTTTGAATTTTTCAAGAAACAGAAAATGTTTAAAATGCAAAGAAGATGGCCCTAGAAGAGTTGAAGTAGATGATATTGAAATGAAGAGTGGAGATTGGATCTGCCCAGAGTGTAACTTTATGAACTTCTCAAGAAACCTTCGCTGCTTAAAGTGCAATACAGAGGGGCCGAAGAAGATAACTGCCGATGACATTGAAATGAAGAAGGGAGATTGGGACTGCCCAAAATGTGCATTCATGAACTTCGCCAGTAACAAAAAATGCTTGCGATGCCGAGAACACCGCCCAAAGAGGGAGCTGAATCCAGGAGAATGGGAATGCCCCTCGTAA 1191 46.01 MSARNFLHFRAAISQATSRALSPIFPRRFPPNLTSIVNCSSSTAIDSADSGGVDAPQPHSSLIHHPWPEWVSFVNGLKSKGYLREPASEDANGDETGGDAAAPFETDYKDMYLMKQAFLSFARDRYDVFQSLSTDDIRTVVKDGCPNLFRKFINSSKRLRAYVQLDEADVCSACNLRGACDRAYVILMETEATARTVDIARLLLTYALDPLVLSGGDKPMGRENVEVSVRKLLSELSELSKTPLDEAAGRTDMTTPTRKEKPSKLTNDALTKDVEMKRGDWMCTKCNFLNFSRNRKCLKCKEDGPRRVEVDDIEMKSGDWICPECNFMNFSRNLRCLKCNTEGPKKITADDIEMKKGDWDCPKCAFMNFASNKKCLRCREHRPKRELNPGEWECPS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2465030 2471970 + Sed0008851.2 Sed08g0408 722184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0408 396 ProSiteProfiles Zinc finger RanBP2 type profile. 277 306 IPR001876 -
Sed08g0408 396 SUPERFAMILY Ran binding protein zinc finger-like 312 345 IPR036443 -
Sed08g0408 396 SMART zf_4 279 303 IPR001876 -
Sed08g0408 396 SMART zf_4 357 381 IPR001876 -
Sed08g0408 396 SMART zf_4 318 342 IPR001876 -
Sed08g0408 396 ProSitePatterns Zinc finger RanBP2-type signature. 359 378 IPR001876 -
Sed08g0408 396 MobiDBLite consensus disorder prediction 244 263 - -
Sed08g0408 396 Pfam Zn-finger in Ran binding protein and others 355 379 IPR001876 -
Sed08g0408 396 Pfam Zn-finger in Ran binding protein and others 316 344 IPR001876 -
Sed08g0408 396 Pfam Zn-finger in Ran binding protein and others 278 301 IPR001876 -
Sed08g0408 396 Coils Coil 222 242 - -
Sed08g0408 396 SUPERFAMILY Ran binding protein zinc finger-like 272 304 IPR036443 -
Sed08g0408 396 SUPERFAMILY Ran binding protein zinc finger-like 350 384 IPR036443 -
Sed08g0408 396 PANTHER ZINC FINGER PROTEIN 348 396 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Sed08g0408 396 ProSiteProfiles Zinc finger RanBP2 type profile. 355 384 IPR001876 -
Sed08g0408 396 ProSiteProfiles Zinc finger RanBP2 type profile. 316 345 IPR001876 -
Sed08g0408 396 Gene3D - 268 306 - -
Sed08g0408 396 Gene3D - 308 346 - -
Sed08g0408 396 Gene3D - 347 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0408 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0408 Sed-Chr8:2465030 Sed12g2123 Sed-Chr12:31900270 1.50E-128 dispersed
Sed08g0407 Sed-Chr8:2465030 Sed08g0408 Sed-Chr8:2465030 5.40E-180 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37