Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0426 ATGACACACCCATCTCCGCCGCCGACCACCATCTTCATTCTGGTTTTGATTTCATCAGAGCTCATAATCCTGTCCAAAAGTGCCGCCACCGACGCCGAGGCGCTTCTCAAATTCAAAGGGTCGCTTGAAATCAGCAACGATGCGCTGAGCAACTGGGCCGCCGCCGGCGGCAACTCCTCCGCCCCTTGTTCCGGCAAAACCCCCAACTGGGTCGGCGTGATCTGCGACAGGAACGGCAATGTGTGGGGTTTGCAGCTTGAGAAGATGGGGCTGAAGGGTAGCAGCCTTGACATGGAGTCCCTCCAAGGGGTGCCCCAGTTAAGGACACTGAGCCTTATGGATAATGGGTTTGAAGGGTCTTTTCCAGACGTCCACAGACTTGGGGCTCTGAAGAGTCTGTATCTGTCTGGGAATCGCTTCACAGGGGACATTCCTGGGGATTTGTTTTTGAGTATGTTGTCTTTGAAGAAAGTTCATTTGGCTAATAACCAATTGGAGGGGCAGATTCCTTGGTCATTGCTTGATTTGCCTAAGTTGTTGGAGTTGAGACTTGAAGGGAATAAGTTTTCTGGGTTGATTCCTAAGTTTCAATCCACAACTTTGAAGGCCTTTAATGTCTCTAATAATCTTCAGCTTCATGGCCCTATCCCTCAAACCCTCACCAACATTGATCCATCCTCCTTTGCAGGCATTGAAGGTTTATGTGGAGCGCCACTTAGCAAACCATGCAGCAGTTCAATAATGCCATCAGTTGCGAGCATCGTAATGGTTTCAATAGCCGTGACAGCGGCTCTGCTTGCCATCGGTGCTGGAATAGTCATCCTTAGTCGTCGAAACCAATCATTTTCTCCTAGTGATAATCCAGCCCACAACAAGTCTCCACATGCTAGTGAGTTAAATCCAGCACTCGGGGCAAATTCACCAGACCGGGGCTCCAACCATGGGAGCGGGTCGGGTAGGCGAGGCATCGAGAGTGCTAAGTTGATATTTGTAAGAGAGGAGACAGAGAGGTTTGATTTATCAGACTTGCTTAGAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAAGCAGCCTTGACCATTGGACCTGTGATGGTTGTGAAGAGGTTCAAGCAAATGAACAATGTGGACAAAGAGGAATTCCAAGAACATATGAGGAGAATTGGAAGGTTGAAACACCCCAATTTGCTCCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAGCTTCTCATTACGGACTATATCGAGAGGGGTAGCTTGGCCGTTCAACTTCACGGGAACAAGTCCTTGGGTCAACCAGCCCTGGATTGGCCTGCAAGGTTGAAGATCATCAAGGGCGTTGCAAAGGGTCTACGCTATCTCTACGCTGAGCTTCCAAGTCTCATAACCCCACATGGCCATATCAAGTCCTCAAATGTCCTTCTCAAGGCCAATTACGAGCCCGTTCTTTCCGACTATGGCTTGATCCCGGTTGTGAACCAAGAGCTTGCCCAAGAGCTAATGGTGGCCTACAAATCCCCCGAGTACGCCCAACAAGGCCGCATCACGAAGAAGACCGATGTGTGGAGCTTCGGGCTGTTGATATTAGAGATTCTAACAGGGAAATACCCAGCCAACTTCCTGCATCCGAGCAAGGGTAATGACGACGAAGATTTGGCGAGTTGGGTCAAAGCCATTCCTGAAGAAGAATGGAACAGCCAAGTGTTTGATAAGGACATGAGACCAACGAAGAGCAGCGATGGCGAGCTTATGAAGCTACTGGGGATTGCAATGGCGTGTTGCGAGAGCGACTTCGAGAAGAGGATGGATTTGCGAGAGGCTGTGGAGAAGATTGAGGAGTTGAAAGAGAAAGATGGGGATGATGAATTCTTTTCTTCATATGCCAGTGAAGCTGACAATAGATCTTCAAGAGGGTTTTCTGATGAACTCAACTTTGTCATGTGA 1962 48.88 MTHPSPPPTTIFILVLISSELIILSKSAATDAEALLKFKGSLEISNDALSNWAAAGGNSSAPCSGKTPNWVGVICDRNGNVWGLQLEKMGLKGSSLDMESLQGVPQLRTLSLMDNGFEGSFPDVHRLGALKSLYLSGNRFTGDIPGDLFLSMLSLKKVHLANNQLEGQIPWSLLDLPKLLELRLEGNKFSGLIPKFQSTTLKAFNVSNNLQLHGPIPQTLTNIDPSSFAGIEGLCGAPLSKPCSSSIMPSVASIVMVSIAVTAALLAIGAGIVILSRRNQSFSPSDNPAHNKSPHASELNPALGANSPDRGSNHGSGSGRRGIESAKLIFVREETERFDLSDLLRASAEILGSGCFGSSYKAALTIGPVMVVKRFKQMNNVDKEEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITDYIERGSLAVQLHGNKSLGQPALDWPARLKIIKGVAKGLRYLYAELPSLITPHGHIKSSNVLLKANYEPVLSDYGLIPVVNQELAQELMVAYKSPEYAQQGRITKKTDVWSFGLLILEILTGKYPANFLHPSKGNDDEDLASWVKAIPEEEWNSQVFDKDMRPTKSSDGELMKLLGIAMACCESDFEKRMDLREAVEKIEELKEKDGDDEFFSSYASEADNRSSRGFSDELNFVM 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2616673 2621426 - Sed0027269.1 Sed08g0426 722202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0426 653 FunFam pollen receptor-like kinase 1 315 420 - -
Sed08g0426 653 Gene3D Ribonuclease Inhibitor 126 245 IPR032675 -
Sed08g0426 653 MobiDBLite consensus disorder prediction 283 321 - -
Sed08g0426 653 Gene3D Transferase(Phosphotransferase) domain 1 421 639 - -
Sed08g0426 653 FunFam Nuclear pore complex protein NUP107 28 195 - -
Sed08g0426 653 SUPERFAMILY Protein kinase-like (PK-like) 349 620 IPR011009 -
Sed08g0426 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 29 622 IPR046959 -
Sed08g0426 653 ProSiteProfiles Protein kinase domain profile. 345 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0426 653 Pfam Protein tyrosine and serine/threonine kinase 349 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0426 653 Gene3D Ribonuclease Inhibitor 23 122 IPR032675 -
Sed08g0426 653 Gene3D Phosphorylase Kinase; domain 1 316 420 - -
Sed08g0426 653 FunFam Pollen receptor-like kinase 1 421 631 - -
Sed08g0426 653 Pfam Leucine rich repeat N-terminal domain 29 76 IPR013210 -
Sed08g0426 653 Pfam Leucine rich repeat 130 189 IPR001611 GO:0005515(InterPro)
Sed08g0426 653 ProSiteProfiles Leucine-rich repeat profile. 129 151 IPR001611 GO:0005515(InterPro)
Sed08g0426 653 SUPERFAMILY L domain-like 61 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1840 Sed-Chr3:12190994 Sed08g0426 Sed-Chr8:2616673 3.60E-92 dispersed
Sed06g2321 Sed-Chr6:46562490 Sed08g0426 Sed-Chr8:2616673 3.30E-141 dispersed
Sed08g0426 Sed-Chr8:2616673 Sed13g2109 Sed-Chr13:25795179 3.50E-114 dispersed
Sed03g1520 Sed-Chr3:9697348 Sed08g0426 Sed-Chr8:2616673 5.30E-140 transposed
Sed07g1202 Sed-Chr7:8994736 Sed08g0426 Sed-Chr8:2616673 1.20E-79 transposed
Sed01g1779 Sed-Chr1:13018392 Sed08g0426 Sed-Chr8:2616673 1.80E-65 wgd
Sed12g2137 Sed-Chr12:31974919 Sed08g0426 Sed-Chr8:2616673 7.40E-250 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79591 PF07714 PK_Tyr_Ser-Thr 4.00E-30 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0426 K28077 - csv:101213261 947.962