Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0428 | ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATCTGCATGCGATGCAAGGCGAAGCCGTCGGACTTGGAGACGATCACTTGCAAGACTTGCGTCACTCCTTGGCATGTCGATTGTCTCGCAAATCGACCGGAAACCTTGGCGTCTACGCTTCAATGGGAGTGTCCTGACTGTGACTGCTCTCCTCCGCCGGAACACGTTCCTCTTCCGCCGCCGGCTGCGCCGTCCAGTGGTCTTGTGGCCTCGATTCGAGCCATTGAGGTTGATTCTTCGCTCACGGACCGTGAGAAGGCTAAGAAGCGTCAAGAGCTTCTTAGCGGAAAGTCGCAGTCCGATAAGGATGATCATGATGCTAGCAATGAGAAGACAAAACTCGGGAACGATGTCTTGGATTTGCTTGATAAGAGTTTCAACTGCTCTTTTTGCATGCAGTTACCAGAAAGGCCAGTTACTACACCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGGAAGAATACTTGTGCGAAGTGCCGCAGTGTGATTCCTTCCAAAATGGCTAGCCAGCCCCGTATTAATTCGGCTCTTGTTGTGGCTATTCGAATGGCGAAGTTGTCGAAATCTGTTGCCTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATGAAAATAGACCGGATAAAGCCTATACTACCGACCGGGCACAAAAAACAGGGAAGGCTAATGCTGCTAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCTGAAAATGATCCTGGGAGAAACTTGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGTTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGCATAGCAGGGCAGTCGAGTAATGGTGCACAATCAGTGGTTCTTTCTGGGGGTTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGTGGTCGAGACCTTAGTGGGAACAAGCGTACAAATAAGGATCAGTCCTTTGACCAGGAATTTGAAAAATCAAACAAAGCACTACAAGTTAGCTGCTTGAAAGGTTACCCTGTTCGGGTTGTTAGATCTCACAAAGAGAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGCAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGTGATGAACAAGGAGATCGTCCTAGACCCTTACCTGCAATTCCAGAGTTGAAAAAAGCTACAAATATTACAGAGAGGAAGGGAGGTCCGTCATGGGACTTTGATGAGAAAGATACTAAGTGGAAGTGGAGCAAAGCTCCACCAACGAGTAAGAAACCGGTTGCAACCGAAGATTCTGCTACTGGGAAGAGGTCAAGGGCAAAAATTAGGAAATCATATCATATGAATGTCAGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGTGAGGTGATGAGTCTGCCGATTACGACGCCTTGTGCACATAACTTCTGCAAGACATGCTTGGAAGGTGCTTTTGAGGGCAAGACATTCTTGAGAGACAGAAGCCGAGGAGGACGAGCTCTTAGATCCCAAAAGAATGTCATGGCTTGTCCTGGTTGCCCTACAGATATTTCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATTGAGTCGTTAAAAAGTAAGATCGAAGAAGAAGGGGATGCGTCTGAGAAACTTGGTGAGGAGGATGAGGAAGATGACGAGGAGGATGAGGAAAAAGATGGAAGCAACCGAAAGCGAGCAAAGGAGGAGGTGGTTAATGGTGGAGAGGAAAATGCTGTGGATAATTTGGAATGA | 1941 | 46.68 | MAQVSQLPCDGDGICMRCKAKPSDLETITCKTCVTPWHVDCLANRPETLASTLQWECPDCDCSPPPEHVPLPPPAAPSSGLVASIRAIEVDSSLTDREKAKKRQELLSGKSQSDKDDHDASNEKTKLGNDVLDLLDKSFNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRSVIPSKMASQPRINSALVVAIRMAKLSKSVASGGPQKVYHFVHNENRPDKAYTTDRAQKTGKANAASGKIFVTIPSDHFGPIPAENDPGRNLGVLVGECWEDRLECRQWGAHFPHVAGIAGQSSNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQEFEKSNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEQGDRPRPLPAIPELKKATNITERKGGPSWDFDEKDTKWKWSKAPPTSKKPVATEDSATGKRSRAKIRKSYHMNVRERLLKEFSCLICREVMSLPITTPCAHNFCKTCLEGAFEGKTFLRDRSRGGRALRSQKNVMACPGCPTDISDFLQNLQVNRELLDVIESLKSKIEEEGDASEKLGEEDEEDDEEDEEKDGSNRKRAKEEVVNGGEENAVDNLE | 646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2632891 | 2637409 | - | Sed0010227.1 | Sed08g0428 | 722204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0428 | 646 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 492 | 617 | IPR013083 | - | |
Sed08g0428 | 646 | SUPERFAMILY | FYVE/PHD zinc finger | 7 | 66 | IPR011011 | - | |
Sed08g0428 | 646 | CDD | RING-HC_ORTHRUS_rpt1 | 138 | 184 | IPR047498 | - | |
Sed08g0428 | 646 | Gene3D | - | 240 | 436 | IPR036987 | - | |
Sed08g0428 | 646 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 3 | 621 | IPR045134 | GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Sed08g0428 | 646 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 207 | IPR013083 | - | |
Sed08g0428 | 646 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 180 | IPR001841 | - | |
Sed08g0428 | 646 | SUPERFAMILY | RING/U-box | 506 | 594 | - | - | |
Sed08g0428 | 646 | Pfam | Zinc finger, C3HC4 type (RING finger) | 141 | 179 | IPR018957 | GO:0046872(InterPro) | |
Sed08g0428 | 646 | MobiDBLite | consensus disorder prediction | 604 | 620 | - | - | |
Sed08g0428 | 646 | SMART | PHD_3 | 14 | 61 | IPR001965 | - | |
Sed08g0428 | 646 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 240 | 435 | - | - | |
Sed08g0428 | 646 | ProSitePatterns | Zinc finger PHD-type signature. | 15 | 60 | IPR019786 | - | |
Sed08g0428 | 646 | SMART | ring_2 | 513 | 569 | IPR001841 | - | |
Sed08g0428 | 646 | SMART | ring_2 | 141 | 179 | IPR001841 | - | |
Sed08g0428 | 646 | MobiDBLite | consensus disorder prediction | 468 | 493 | - | - | |
Sed08g0428 | 646 | MobiDBLite | consensus disorder prediction | 94 | 124 | - | - | |
Sed08g0428 | 646 | MobiDBLite | consensus disorder prediction | 598 | 646 | - | - | |
Sed08g0428 | 646 | Pfam | SAD/SRA domain | 269 | 420 | IPR003105 | - | |
Sed08g0428 | 646 | ProSitePatterns | Zinc finger RING-type signature. | 528 | 537 | IPR017907 | - | |
Sed08g0428 | 646 | SUPERFAMILY | RING/U-box | 132 | 187 | - | - | |
Sed08g0428 | 646 | Pfam | RING-type zinc-finger | 513 | 537 | IPR027370 | - | |
Sed08g0428 | 646 | SMART | G9a_1 | 264 | 421 | IPR003105 | - | |
Sed08g0428 | 646 | ProSiteProfiles | Zinc finger RING-type profile. | 513 | 569 | IPR001841 | - | |
Sed08g0428 | 646 | ProSiteProfiles | YDG domain profile. | 269 | 417 | IPR003105 | - | |
Sed08g0428 | 646 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 87 | 208 | - | - | |
Sed08g0428 | 646 | SUPERFAMILY | PUA domain-like | 243 | 438 | IPR015947 | - | |
Sed08g0428 | 646 | MobiDBLite | consensus disorder prediction | 621 | 637 | - | - | |
Sed08g0428 | 646 | Coils | Coil | 590 | 610 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0428 | Sed-Chr8:2632891 | Sed12g0436 | Sed-Chr12:2635909 | 1.40E-19 | dispersed | |
Sed08g0428 | Sed-Chr8:2632891 | Sed08g0429 | Sed-Chr8:2632891 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0428 | K10638 | - | csv:101219001 | 1074.31 |