Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0428 ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATCTGCATGCGATGCAAGGCGAAGCCGTCGGACTTGGAGACGATCACTTGCAAGACTTGCGTCACTCCTTGGCATGTCGATTGTCTCGCAAATCGACCGGAAACCTTGGCGTCTACGCTTCAATGGGAGTGTCCTGACTGTGACTGCTCTCCTCCGCCGGAACACGTTCCTCTTCCGCCGCCGGCTGCGCCGTCCAGTGGTCTTGTGGCCTCGATTCGAGCCATTGAGGTTGATTCTTCGCTCACGGACCGTGAGAAGGCTAAGAAGCGTCAAGAGCTTCTTAGCGGAAAGTCGCAGTCCGATAAGGATGATCATGATGCTAGCAATGAGAAGACAAAACTCGGGAACGATGTCTTGGATTTGCTTGATAAGAGTTTCAACTGCTCTTTTTGCATGCAGTTACCAGAAAGGCCAGTTACTACACCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGGAAGAATACTTGTGCGAAGTGCCGCAGTGTGATTCCTTCCAAAATGGCTAGCCAGCCCCGTATTAATTCGGCTCTTGTTGTGGCTATTCGAATGGCGAAGTTGTCGAAATCTGTTGCCTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATGAAAATAGACCGGATAAAGCCTATACTACCGACCGGGCACAAAAAACAGGGAAGGCTAATGCTGCTAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCTGAAAATGATCCTGGGAGAAACTTGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGTTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGCATAGCAGGGCAGTCGAGTAATGGTGCACAATCAGTGGTTCTTTCTGGGGGTTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGTGGTCGAGACCTTAGTGGGAACAAGCGTACAAATAAGGATCAGTCCTTTGACCAGGAATTTGAAAAATCAAACAAAGCACTACAAGTTAGCTGCTTGAAAGGTTACCCTGTTCGGGTTGTTAGATCTCACAAAGAGAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGCAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGTGATGAACAAGGAGATCGTCCTAGACCCTTACCTGCAATTCCAGAGTTGAAAAAAGCTACAAATATTACAGAGAGGAAGGGAGGTCCGTCATGGGACTTTGATGAGAAAGATACTAAGTGGAAGTGGAGCAAAGCTCCACCAACGAGTAAGAAACCGGTTGCAACCGAAGATTCTGCTACTGGGAAGAGGTCAAGGGCAAAAATTAGGAAATCATATCATATGAATGTCAGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGTGAGGTGATGAGTCTGCCGATTACGACGCCTTGTGCACATAACTTCTGCAAGACATGCTTGGAAGGTGCTTTTGAGGGCAAGACATTCTTGAGAGACAGAAGCCGAGGAGGACGAGCTCTTAGATCCCAAAAGAATGTCATGGCTTGTCCTGGTTGCCCTACAGATATTTCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATTGAGTCGTTAAAAAGTAAGATCGAAGAAGAAGGGGATGCGTCTGAGAAACTTGGTGAGGAGGATGAGGAAGATGACGAGGAGGATGAGGAAAAAGATGGAAGCAACCGAAAGCGAGCAAAGGAGGAGGTGGTTAATGGTGGAGAGGAAAATGCTGTGGATAATTTGGAATGA 1941 46.68 MAQVSQLPCDGDGICMRCKAKPSDLETITCKTCVTPWHVDCLANRPETLASTLQWECPDCDCSPPPEHVPLPPPAAPSSGLVASIRAIEVDSSLTDREKAKKRQELLSGKSQSDKDDHDASNEKTKLGNDVLDLLDKSFNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRSVIPSKMASQPRINSALVVAIRMAKLSKSVASGGPQKVYHFVHNENRPDKAYTTDRAQKTGKANAASGKIFVTIPSDHFGPIPAENDPGRNLGVLVGECWEDRLECRQWGAHFPHVAGIAGQSSNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQEFEKSNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEQGDRPRPLPAIPELKKATNITERKGGPSWDFDEKDTKWKWSKAPPTSKKPVATEDSATGKRSRAKIRKSYHMNVRERLLKEFSCLICREVMSLPITTPCAHNFCKTCLEGAFEGKTFLRDRSRGGRALRSQKNVMACPGCPTDISDFLQNLQVNRELLDVIESLKSKIEEEGDASEKLGEEDEEDDEEDEEKDGSNRKRAKEEVVNGGEENAVDNLE 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2632891 2637409 - Sed0010227.1 Sed08g0428 722204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0428 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 617 IPR013083 -
Sed08g0428 646 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Sed08g0428 646 CDD RING-HC_ORTHRUS_rpt1 138 184 IPR047498 -
Sed08g0428 646 Gene3D - 240 436 IPR036987 -
Sed08g0428 646 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 621 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Sed08g0428 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 207 IPR013083 -
Sed08g0428 646 ProSiteProfiles Zinc finger RING-type profile. 141 180 IPR001841 -
Sed08g0428 646 SUPERFAMILY RING/U-box 506 594 - -
Sed08g0428 646 Pfam Zinc finger, C3HC4 type (RING finger) 141 179 IPR018957 GO:0046872(InterPro)
Sed08g0428 646 MobiDBLite consensus disorder prediction 604 620 - -
Sed08g0428 646 SMART PHD_3 14 61 IPR001965 -
Sed08g0428 646 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 240 435 - -
Sed08g0428 646 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Sed08g0428 646 SMART ring_2 513 569 IPR001841 -
Sed08g0428 646 SMART ring_2 141 179 IPR001841 -
Sed08g0428 646 MobiDBLite consensus disorder prediction 468 493 - -
Sed08g0428 646 MobiDBLite consensus disorder prediction 94 124 - -
Sed08g0428 646 MobiDBLite consensus disorder prediction 598 646 - -
Sed08g0428 646 Pfam SAD/SRA domain 269 420 IPR003105 -
Sed08g0428 646 ProSitePatterns Zinc finger RING-type signature. 528 537 IPR017907 -
Sed08g0428 646 SUPERFAMILY RING/U-box 132 187 - -
Sed08g0428 646 Pfam RING-type zinc-finger 513 537 IPR027370 -
Sed08g0428 646 SMART G9a_1 264 421 IPR003105 -
Sed08g0428 646 ProSiteProfiles Zinc finger RING-type profile. 513 569 IPR001841 -
Sed08g0428 646 ProSiteProfiles YDG domain profile. 269 417 IPR003105 -
Sed08g0428 646 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 87 208 - -
Sed08g0428 646 SUPERFAMILY PUA domain-like 243 438 IPR015947 -
Sed08g0428 646 MobiDBLite consensus disorder prediction 621 637 - -
Sed08g0428 646 Coils Coil 590 610 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0428 Sed-Chr8:2632891 Sed12g0436 Sed-Chr12:2635909 1.40E-19 dispersed
Sed08g0428 Sed-Chr8:2632891 Sed08g0429 Sed-Chr8:2632891 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0428 K10638 - csv:101219001 1074.31