Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0436 ATGAAGAACTTGCCTCTCTATTTCCTCCCAATGCCACCGTCTCTCCGGCCGCCGCTATCGACGGCCCTTCTCTTCTTGTCCCACCTCTCCCATTTCATAACCCTCTCCCTCTTAGGCTTTGGAGCTCTAAAGCTCACCAAAACTCGAACCTCCTCCCCAAATAACCTCGACATGTTCTTCACTGCCGTCTCCGGGGCCACCGTCTCGAGCATGTCAGTCGTCGAAATGGAAGTCTTTTCCAACACCCAACTCCTCATCATCACCGCCCTCATGTTCCTCGGCGGAGAAGTCTTCGTCTCCGCCGTCCGGTTCCAACTCTCCCGTCGATCCAAATACAAACAAAACCTAACCGATTCGGTTCAACGGGTCGAGCTGGAAAGTGGATCGGGGCCGGGGACGGGGACCAGTATTGAACCATCATGTTTGAAGGTTTTGGGATGGGTGATAATTGGGTATCTATTGGGTACAAATGTTGTTGGATCTTGTTCGGTCTTGTTCTACCTTTCTATGGTACCACAAGCTAAGAAAGTGCTTGAAACCAAAGGCTTAAATTTGGTTACTTTTTCAATTTTCAGTACGGTTTCTACTTTTACCAACTGTGGATTCATTCCCACTAATGAAAATATGATCGTTTTCAAGAACAATTCTTGCCTTTTGCTCATTCTCATTGCCCAGGTACTCCTCGGCGGGTGTTTGTACCCGGTGGGACTCCGGTTGGTAATAATGGCGGCAGCGAAGGCGACCAGGAAGAAAGAGTTTCGATACGTACTGGAGAACGACACAGAGATGGGATATTCCCATCTCTTGTCGGGGCTCCGGTGCGGGTTTCTGGCGGCAACGGTGGCGGGGTTCATAATCGTGCAGTTGATCGTATTTTGCTCACTGGAATGGAACAATTCCGGCGGAATTTGGAATGAAATGAATGCGTACCAGAAATTTGTGGGATCACTTTTTCAGGTCATCAATTCAAGACACACCGGAGAATCGGTGGTGGACATATCGCTCATCTCGCCGGCGATCTTGGTCGTATTTATTGTCATGATGTATCTGCCACCATACACAACTTTTTTACCATCAAGGAACAAAGAGTTAGATTCAATGTCCAATTTGAAGACCAAAAAAAGGCAACACTTAGTGGAATTAATGGCATTGTCACAGCTCTCTTATTTGGCCATTTTCATAATTCTCATATGCATTACTGAGAAAGAAAAGCTAAGAGATGACCCACTCAACTTCAATGTGCTCAACATCACCCTTGAAGTCATCAGTGCATATGGAAATGTTGGATTCTCAACTGGTTATAGCTGCAAAAGACAAATTAAACCTCAAAGTTCTTGCAAAGATGCATGGTATGGCTTTGCTGGTAGATGGAGTGGAAAAGGAAAATTTATCCTCATTATTGTTATGATCTTTGGAAGATTAAAAAGTTTTACTATGCATGCTGGTAAGGCATGGAAATTGTCTTAG 1467 45.33 MKNLPLYFLPMPPSLRPPLSTALLFLSHLSHFITLSLLGFGALKLTKTRTSSPNNLDMFFTAVSGATVSSMSVVEMEVFSNTQLLIITALMFLGGEVFVSAVRFQLSRRSKYKQNLTDSVQRVELESGSGPGTGTSIEPSCLKVLGWVIIGYLLGTNVVGSCSVLFYLSMVPQAKKVLETKGLNLVTFSIFSTVSTFTNCGFIPTNENMIVFKNNSCLLLILIAQVLLGGCLYPVGLRLVIMAAAKATRKKEFRYVLENDTEMGYSHLLSGLRCGFLAATVAGFIIVQLIVFCSLEWNNSGGIWNEMNAYQKFVGSLFQVINSRHTGESVVDISLISPAILVVFIVMMYLPPYTTFLPSRNKELDSMSNLKTKKRQHLVELMALSQLSYLAIFIILICITEKEKLRDDPLNFNVLNITLEVISAYGNVGFSTGYSCKRQIKPQSSCKDAWYGFAGRWSGKGKFILIIVMIFGRLKSFTMHAGKAWKLS 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2687469 2694927 - Sed0022662.1 Sed08g0436 722212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0436 488 Pfam Cation transport protein 44 350 IPR003445 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0055085(InterPro)
Sed08g0436 488 Pfam Cation transport protein 382 478 IPR003445 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0055085(InterPro)
Sed08g0436 488 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 24 118 IPR051143 GO:0005886(PANTHER)|GO:0008324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2148 Sed-Chr12:32080542 Sed08g0436 Sed-Chr8:2687469 4.40E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0436 K24976 - csv:101206239 697.582