Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0440 ATGGGAGATCAAGATCATGAGCTTTGCAACATTAGGCTTAGCCTTGGCTTAGGATTTGGAGATGAATTTAGCCCCAAAAAAATCCAAAAAATCAACAACAATAACAACCAAAAATTCTTCCCTGATTTGTCCTTCACTCTCATTAATCCAAAGCAAGAATTGGGTTTGAACATGATGGAGATTCATGATCATTCAAATCCAAGCAATGAAAATTCTCAAAGTTCTTCATTCAACAACAACAATAATAATAATAATGTCATTTGTGGATCAGAAACTGAGAGGAAAAAGCTTAGGCTTTCCAAAGAACAATCTACTTTGCTTGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCAGCTCAGAAACAGGCACTTGCCCAACAATTAAAACTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACCGACGTGCAAGAACGAAATTGAAACAAACAGAAGTAGATTGCGAGTTTTTGAAGAAATGTTGCGAGAGGTTAAATGAAGAGAATCGAAGGATGAAGAAAGAGTTGAATGAATTACGATCCATAAAACATGGAGCTTCACAGTTGTATATTCAGCTGCCTAAGGCCGCGACGCTCACAATTTGCCCGTCATGCGACAAAATTACGACCACCGCTGCCACCGCCGCTGCCGCGGACCACAATTCTCCTCCACAATAG 681 39.5 MGDQDHELCNIRLSLGLGFGDEFSPKKIQKINNNNNQKFFPDLSFTLINPKQELGLNMMEIHDHSNPSNENSQSSSFNNNNNNNNVICGSETERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLKLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRMKKELNELRSIKHGASQLYIQLPKAATLTICPSCDKITTTAATAAAADHNSPPQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2723647 2725381 - Sed0025133.1 Sed08g0440 722216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0440 226 Coils Coil 149 183 - -
Sed08g0440 226 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
Sed08g0440 226 SMART halz 150 193 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0440 226 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed08g0440 226 SMART HOX_1 92 154 IPR001356 GO:0003677(InterPro)
Sed08g0440 226 CDD homeodomain 94 151 IPR001356 GO:0003677(InterPro)
Sed08g0440 226 Pfam Homeobox associated leucine zipper 150 183 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0440 226 SUPERFAMILY Homeodomain-like 75 151 IPR009057 -
Sed08g0440 226 MobiDBLite consensus disorder prediction 61 87 - -
Sed08g0440 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 216 IPR050762 -
Sed08g0440 226 Gene3D - 88 155 - -
Sed08g0440 226 MobiDBLite consensus disorder prediction 62 87 - -
Sed08g0440 226 Pfam Homeodomain 94 148 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0440 Sed-Chr8:2723647 Sed09g1437 Sed-Chr9:38253639 7.50E-40 dispersed
Sed12g2155 Sed-Chr12:32126683 Sed08g0440 Sed-Chr8:2723647 7.40E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39277 PF00046 Homeodomain 1.50E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0440 K09338 - csv:101203427 244.588