Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0447 | ATGGCCGTCGACTTCGCTTCTTTTCCGTCCACCGCCGGCGACCCATCCGCCGCCGTCCAAGAAGCCGCCGCCGCCGGAATCCAGAGCATGGAGCATCTAATCCGCCTCTTATCCACCCAACAAAACCCCAATCTCAACTGCTCCGAAGTCGCCGATTTCACCGTTTCCAAATTCAAACGGGTCATCTCCCTCCTGAACCGGACCGGCCACGCCCGGTTCCGCCGCGGCCCGCCCTCCTCCCCTGTTTCCGGTTCCCCCAACCCGGTCCTCAATTCCCTCGATCCGATCCCCAAATCCTCCACCATCGATTTCTTTAAGCCGAATTTCGCCAAATCGGCCGATTCCAAGGCGCCGGCTGAGTCCACTACGACGTCGTCTTTTGTGTCGTCGATCACCGGCGATGGCAGCGTTTCGAACGGGAAGATGGGGTTTTCTCTGTTTCCGACGGCGGCGGTTACTTCTGGTAAACCGCCGTTGGCGGCGAAGAGAAAGTGCCAGGATGGTTTACAAGCTGGTTGCAAGATGAATTCGAAGGAGTGTCACTGTTCGAGCTCGAAGAAAAGGAAATCAGGAGTGAAGAAGAGCATACGAGTTCCGGCGAAGAGTTCTAAGATCGCCGACATACCTTCCGATGAATATTCATGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCTAGAGGATATTATAGATGCAGTACTGTGAAAGGATGTCCGGCCAGAAAAAAGGTTGAAAGAGTTCGCGACGATCCGACGATGCTCCTCGTAACTTACGACGGCGATCACCGTCACCCGCAGGCTACGGTCACCGATGCCAGCGTGGCCTTCACCCACCGTTGA | 849 | 55.59 | MAVDFASFPSTAGDPSAAVQEAAAAGIQSMEHLIRLLSTQQNPNLNCSEVADFTVSKFKRVISLLNRTGHARFRRGPPSSPVSGSPNPVLNSLDPIPKSSTIDFFKPNFAKSADSKAPAESTTTSSFVSSITGDGSVSNGKMGFSLFPTAAVTSGKPPLAAKRKCQDGLQAGCKMNSKECHCSSSKKRKSGVKKSIRVPAKSSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERVRDDPTMLLVTYDGDHRHPQATVTDASVAFTHR | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2773120 | 2775752 | - | Sed0003080.1 | Sed08g0447 | 722223 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0447 | 282 | ProSiteProfiles | WRKY domain profile. | 204 | 270 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g0447 | 282 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 19 | 273 | IPR044810 | GO:0003700(InterPro) | |
Sed08g0447 | 282 | SMART | WRKY_cls | 209 | 269 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g0447 | 282 | FunFam | WRKY transcription factor 65 | 193 | 270 | - | - | |
Sed08g0447 | 282 | Pfam | Plant zinc cluster domain | 162 | 207 | IPR018872 | - | |
Sed08g0447 | 282 | Gene3D | WRKY domain | 193 | 270 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g0447 | 282 | Pfam | WRKY DNA -binding domain | 211 | 268 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g0447 | 282 | SUPERFAMILY | WRKY DNA-binding domain | 207 | 269 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0447 | Sed-Chr8:2773120 | Sed13g2093 | Sed-Chr13:25655946 | 9.90E-74 | dispersed | |
Sed08g0447 | Sed-Chr8:2773120 | Sed05g1638 | Sed-Chr5:30297805 | 3.40E-74 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39278 | PF03106 | WRKY | 2.70E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0447 | - | - | - | 0.0 |