Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0447 ATGGCCGTCGACTTCGCTTCTTTTCCGTCCACCGCCGGCGACCCATCCGCCGCCGTCCAAGAAGCCGCCGCCGCCGGAATCCAGAGCATGGAGCATCTAATCCGCCTCTTATCCACCCAACAAAACCCCAATCTCAACTGCTCCGAAGTCGCCGATTTCACCGTTTCCAAATTCAAACGGGTCATCTCCCTCCTGAACCGGACCGGCCACGCCCGGTTCCGCCGCGGCCCGCCCTCCTCCCCTGTTTCCGGTTCCCCCAACCCGGTCCTCAATTCCCTCGATCCGATCCCCAAATCCTCCACCATCGATTTCTTTAAGCCGAATTTCGCCAAATCGGCCGATTCCAAGGCGCCGGCTGAGTCCACTACGACGTCGTCTTTTGTGTCGTCGATCACCGGCGATGGCAGCGTTTCGAACGGGAAGATGGGGTTTTCTCTGTTTCCGACGGCGGCGGTTACTTCTGGTAAACCGCCGTTGGCGGCGAAGAGAAAGTGCCAGGATGGTTTACAAGCTGGTTGCAAGATGAATTCGAAGGAGTGTCACTGTTCGAGCTCGAAGAAAAGGAAATCAGGAGTGAAGAAGAGCATACGAGTTCCGGCGAAGAGTTCTAAGATCGCCGACATACCTTCCGATGAATATTCATGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCTAGAGGATATTATAGATGCAGTACTGTGAAAGGATGTCCGGCCAGAAAAAAGGTTGAAAGAGTTCGCGACGATCCGACGATGCTCCTCGTAACTTACGACGGCGATCACCGTCACCCGCAGGCTACGGTCACCGATGCCAGCGTGGCCTTCACCCACCGTTGA 849 55.59 MAVDFASFPSTAGDPSAAVQEAAAAGIQSMEHLIRLLSTQQNPNLNCSEVADFTVSKFKRVISLLNRTGHARFRRGPPSSPVSGSPNPVLNSLDPIPKSSTIDFFKPNFAKSADSKAPAESTTTSSFVSSITGDGSVSNGKMGFSLFPTAAVTSGKPPLAAKRKCQDGLQAGCKMNSKECHCSSSKKRKSGVKKSIRVPAKSSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERVRDDPTMLLVTYDGDHRHPQATVTDASVAFTHR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2773120 2775752 - Sed0003080.1 Sed08g0447 722223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0447 282 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0447 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 273 IPR044810 GO:0003700(InterPro)
Sed08g0447 282 SMART WRKY_cls 209 269 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0447 282 FunFam WRKY transcription factor 65 193 270 - -
Sed08g0447 282 Pfam Plant zinc cluster domain 162 207 IPR018872 -
Sed08g0447 282 Gene3D WRKY domain 193 270 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0447 282 Pfam WRKY DNA -binding domain 211 268 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0447 282 SUPERFAMILY WRKY DNA-binding domain 207 269 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0447 Sed-Chr8:2773120 Sed13g2093 Sed-Chr13:25655946 9.90E-74 dispersed
Sed08g0447 Sed-Chr8:2773120 Sed05g1638 Sed-Chr5:30297805 3.40E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39278 PF03106 WRKY 2.70E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0447 - - - 0.0