Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0451 ATGATGTATGAATTTGGGCACCAGTTTCAAGCTCAAAAACTGCAACAACAAAACAGATGGAGATCAAAGAACGATAGCACGATGACGATGAAGACTTTGATCTCAAGCACAAATAATAATTCGAACGATCAAGATCATCATCACCATCATCATCATCATCGTCAAACTGTCGATAAATCCATGGAAATGGTGGATTTGGATTTCAGTGGCTTATCTCTCGATTCTCTTCCGAACCCTACTCTCAATCTCGCCTCGGTTTCTCATCTCGATCTCTCCAACAACAATCTTCAGGTAATTCCGGAGTCTTTGACAGCTCGATTGCTAAACTTGGTTTGGTTTGATGTGCACTCAAATCAGCTCAAGTCTCTTCCAAATTCTATTGGGTGTCTCTCAAAGCTCAAGATTCTCAATGTCTCTGGCAACCTCATTGTCTCTCTTCCATCCACTATTGAAAATTGCAGATCCTTAGAAGAGCTGAATGCTAACTTCAACCAGCTAATAAGGCTTCCAGACACCATAGGATTTGAGTTGACCAATCTCAAGAAGTTGACAGTCAACTCCAACAAGCTAGCGTTTCTTCCTCACTCGCTCTCCCATTTGACCTCCCTACTCGTGCTCGATACGCACCTCAACTGCCTCCGCTCGCTCCCCGACGACCTCGAGAACCTCATCAACCTCCAAGTGCTCAATGTAAGCCAAAACTTCCAATACCTTCAAGATCTCCCCTACTCGATCGGGCTCCTCATCTCTCTCGTTGAGCTCGACGTCAGCTACAACAAAATCACCTCCCTTCCTGACTCTGTTGGCTGCCTCAAGAATCTCAAGAAGCTCAACGCCGAAGGCAACCCTCTTGCATCGCCCCCGCCCGACGTGATCGAGCAAGGGTTAGACACTGTGAGGTTGTACTTGAGCGACAAGATGAATGGAGTGCATAAAGGATCACAAAAGAAAATGTCGTGGGTGGGGAAACTGGTCAAGTACGGAACTTTCAATAGTCGAGGCAATGGGGTAGCCCGAGAGGAGAAAGATGGGTTTATAATGCCAGAGTATCGATCAATCGATGGTTTAGCGTCACCGAGATATATGGGGAGGTTCTCACCACGTCGCCTATTTTCGCCTCGACATGCTTTCTCAAAGTGA 1140 46.23 MMYEFGHQFQAQKLQQQNRWRSKNDSTMTMKTLISSTNNNSNDQDHHHHHHHHRQTVDKSMEMVDLDFSGLSLDSLPNPTLNLASVSHLDLSNNNLQVIPESLTARLLNLVWFDVHSNQLKSLPNSIGCLSKLKILNVSGNLIVSLPSTIENCRSLEELNANFNQLIRLPDTIGFELTNLKKLTVNSNKLAFLPHSLSHLTSLLVLDTHLNCLRSLPDDLENLINLQVLNVSQNFQYLQDLPYSIGLLISLVELDVSYNKITSLPDSVGCLKNLKKLNAEGNPLASPPPDVIEQGLDTVRLYLSDKMNGVHKGSQKKMSWVGKLVKYGTFNSRGNGVAREEKDGFIMPEYRSIDGLASPRYMGRFSPRRLFSPRHAFSK 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2794300 2800730 - Sed0020380.1 Sed08g0451 722227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0451 379 MobiDBLite consensus disorder prediction 34 58 - -
Sed08g0451 379 SUPERFAMILY L domain-like 64 294 - -
Sed08g0451 379 Gene3D Ribonuclease Inhibitor 4 171 IPR032675 -
Sed08g0451 379 PANTHER LEUCINE-RICH REPEAT-CONTAINING 30 294 IPR050715 GO:0007165(PANTHER)
Sed08g0451 379 Gene3D Ribonuclease Inhibitor 172 305 IPR032675 -
Sed08g0451 379 Pfam Leucine rich repeat 225 284 IPR001611 GO:0005515(InterPro)
Sed08g0451 379 Pfam Leucine rich repeat 86 143 IPR001611 GO:0005515(InterPro)
Sed08g0451 379 SMART LRR_typ_2 271 294 IPR003591 -
Sed08g0451 379 SMART LRR_typ_2 177 199 IPR003591 -
Sed08g0451 379 SMART LRR_typ_2 200 223 IPR003591 -
Sed08g0451 379 SMART LRR_typ_2 83 106 IPR003591 -
Sed08g0451 379 SMART LRR_typ_2 154 176 IPR003591 -
Sed08g0451 379 SMART LRR_typ_2 107 129 IPR003591 -
Sed08g0451 379 SMART LRR_typ_2 130 153 IPR003591 -
Sed08g0451 379 SMART LRR_typ_2 248 270 IPR003591 -
Sed08g0451 379 ProSiteProfiles Leucine-rich repeat profile. 250 271 IPR001611 GO:0005515(InterPro)
Sed08g0451 379 SMART LRR_bac_2 153 172 - -
Sed08g0451 379 SMART LRR_bac_2 83 102 - -
Sed08g0451 379 SMART LRR_bac_2 107 126 - -
Sed08g0451 379 SMART LRR_bac_2 130 149 - -
Sed08g0451 379 SMART LRR_bac_2 248 267 - -
Sed08g0451 379 SMART LRR_bac_2 177 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0592 Sed-Chr11:6957565 Sed08g0451 Sed-Chr8:2794300 1.30E-41 wgd
Sed03g2783 Sed-Chr3:44430003 Sed08g0451 Sed-Chr8:2794300 1.50E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002747 1 3 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 57