Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0457 ATGGACAGTATCGGAGAGGATTACATGGCTTACTTGGGGGATAGCATGTTCGTAGGCGATGAAATCGACAGTTGGGGATTGGACGAGGCGGTTTCCGGCTACTACGATTCGAGTTCGCCGGAGGGAGTTTTGTCGTCATCGCCGGCTTCGAAGAACATAATTTCGGAGAAGAATCGGAGGAGGAAGCTCAACGAGAGGCTTTTTGAACTTCGATCGACTGTTCCACATATTACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGTTTACATACAAGATTTACATGAACAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCAGGAAAGTTGAAGATAGCAGGGTATAAATTTGATCACCAGGAGCTGCCATTGTTGCTCAGATCAAAGAGGAAGAAAACAGAACGCTACAATTCTCCTGCTTCAAGAAATTTCCCCATTGAAGTTCTGGATCTGAATGTAACATATATGGGGGAAAGAACAATGGTGGTAAGCTTGACATGTTGTAAAAGAGCAGATTCAATGGTGAAACTATGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCAAAGCCAATGTTACTACTGTCTCTGGTAGGCTTTTGAAAACTGTCTTCATTGAGGTAACTAAACTACCCTTTCTCTTTCTCATAAGAAATTTAAAAAACAAACTGAAACTGAGGTTTTTTTTTTGGTTTTACTGTTTGAAGTATTTTGTTTGA 735 40.14 MDSIGEDYMAYLGDSMFVGDEIDSWGLDEAVSGYYDSSSPEGVLSSSPASKNIISEKNRRRKLNERLFELRSTVPHITKMDKASIIKDAIVYIQDLHEQERRIQAEIYELESGKLKIAGYKFDHQELPLLLRSKRKKTERYNSPASRNFPIEVLDLNVTYMGERTMVVSLTCCKRADSMVKLCEVFESLKLKIIKANVTTVSGRLLKTVFIEVTKLPFLFLIRNLKNKLKLRFFFWFYCLKYFV 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2883240 2885643 + Sed0009797.1 Sed08g0457 722233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0457 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 111 IPR036638 GO:0046983(InterPro)
Sed08g0457 244 Gene3D - 45 113 IPR036638 GO:0046983(InterPro)
Sed08g0457 244 SMART finulus 53 102 IPR011598 GO:0046983(InterPro)
Sed08g0457 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 47 215 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed08g0457 244 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983(InterPro)
Sed08g0457 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2799 Sed-Chr5:39291127 Sed08g0457 Sed-Chr8:2883240 1.40E-10 dispersed
Sed08g0457 Sed-Chr8:2883240 Sed12g2174 Sed-Chr12:32307592 6.30E-77 dispersed
Sed11g0588 Sed-Chr11:6618461 Sed08g0457 Sed-Chr8:2883240 1.20E-37 wgd
Sed12g2173 Sed-Chr12:32307592 Sed08g0457 Sed-Chr8:2883240 1.50E-73 wgd
Sed03g2789 Sed-Chr3:44555514 Sed08g0457 Sed-Chr8:2883240 5.10E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39279 PF00010 HLH 4.50E-11 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0457 - - - 0.0