Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0460 ATGAGAGATACTGAAAGGGGATTGACCCAGAAGGAACCAAGAAAATTTTCTCACTCCAAGGTGGAAAGTGGATCAGAATTAATCTTGAAGTTGAAACTGTGTAGCAAAATATCTCATTCCAAACAGAAAAAATCAAGAACTATATCACATGCACATGCAATTGGTTCAGCAATCAAGAGGCTACCTCATCCTAAACCTTTGAGCAAGGGGAATAAAAATGTGACAATTAGACAACTGGCTGGTAAAAGAATTCTGCTAAAAAAACTTGATTCAGAATCTTCCAAGGAGTTAGTTTTGTCAAAGCTTCGAGGTGGAAAATCTGTGCCATCGACTAATACGAAAGGGAATGCGGAAAAGGTTGAGCCAGTGGCCAAGATAAACCAACGAAGGAAGAGGAGGAAGCACAAAGTAACAAAGGAAAAGGTTGAGTTAGATGAAGCTTCTCGTCTACAGAGGAGAGCTAGATACCTTATAATTAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCCGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATAAAGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAATTCAAACTTGGAATCCGTGATGCTATTCACCAGCTGGATTTGCTTGGTTCAGTAGGATGCATGGAAGACTCTGTTATTGGTCCTGATGGATCTGTATACCACGAACATATATTCTGTTCGAAATGCAAGTTGGGTGAAGCTTTTCCAGAGGATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCACCAAAAGTGTCTGGATCCACCATTAGACACGAAAAATATTCCTCCTGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTACAAGATGGAAATATTAGAAGGAATGAATGCTCATCTCGGTACTCGGTTCTCGATGAACATTAGCTGGGAGGATGTTTTCAAAGACGAAGCGGCTTCCCCAGATCGTGGTAATGCATTGCTTAATCATGAGGAAGATTGGCCCACAGATGATTCTGCAGATGATGACTACAATCCAGATAAGAATGAGAATGACTATGACAACCCAAGTGGGGAAAAATATGATAAGGATGCTTTGGAGGAGTCAGTTAGTTCAAGCAGCTTGAGTTGGTCTTTAGATGGTGAGGATTTAACTTATAAAGATGGTATTGGATGTGAAGAACACTTTGGTGCTGGCAACACCATAGTTTCTGATGGCTCCAGTGAAGTGGCCATCATATGTGGCCGTCGCCGGCAGCAAGCTGTTGATTATAAAAAGTTACATGTCGAAATGTTTGGAAAGGATGCTCCAGCACAAGAACAAGTTAGTGAAGATGAAGACTGGGGGCCTACAAAAAGAAGCCGGAGAGAAAAGGAGTCCGATGCTGCGACTGCGAGAACTCTTATGTCTCTTTGTGAAAATGAAAAAAAGAGTCAGAATATTGATGTGGATGCAGAGAAAAAACTTGTCAATTCGCAAAGCCGATCATTTTTCAGAATTCCTCGTTATGCAGTCGAGAAACTTCGCCAAGCGTTCGCTGATAATGAACTTCCCTCCAGAGATGTCAAGGAGAATCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCAGAGGGAGCAACACAATCCCATAGTCCTAATAAGACATTCGACGAGTCCGGATTAGCAGATACAAAAGAAATGGCCGAAAATCTGGAATCAGAGGACGCATCAATAAAAGAACTGCTGCTGAAATCGCGCAATAGTAGTCCTTACAAGAAAAGGCAGCACAGAAAAACATCACTTGTATCTTCCAACAATAACAAGGATGTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAATAATATAAAAACAAAGGTAAAGAAAAGGGTTAAATTTGTAGCTAGAGGTGGAGGTCAGGATGCAGAAGTGGAGATGGAGAGACTGTGTAAAATGAAGGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGACTATCAAAAAATAAAGATAATGGGATTTTAGATGGGTCACACATGTTTGAACAGTCTATTGTATATGTTCCTATGGCAGTGTTAAAGGAAAAGGTTTGA 2142 40.38 MRDTERGLTQKEPRKFSHSKVESGSELILKLKLCSKISHSKQKKSRTISHAHAIGSAIKRLPHPKPLSKGNKNVTIRQLAGKRILLKKLDSESSKELVLSKLRGGKSVPSTNTKGNAEKVEPVAKINQRRKRRKHKVTKEKVELDEASRLQRRARYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAMKQILKFKLGIRDAIHQLDLLGSVGCMEDSVIGPDGSVYHEHIFCSKCKLGEAFPEDDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCEYKMEILEGMNAHLGTRFSMNISWEDVFKDEAASPDRGNALLNHEEDWPTDDSADDDYNPDKNENDYDNPSGEKYDKDALEESVSSSSLSWSLDGEDLTYKDGIGCEEHFGAGNTIVSDGSSEVAIICGRRRQQAVDYKKLHVEMFGKDAPAQEQVSEDEDWGPTKRSRREKESDAATARTLMSLCENEKKSQNIDVDAEKKLVNSQSRSFFRIPRYAVEKLRQAFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGATQSHSPNKTFDESGLADTKEMAENLESEDASIKELLLKSRNSSPYKKRQHRKTSLVSSNNNKDVDFGDDISLKNLLNNIKTKVKKRVKFVARGGGQDAEVEMERLCKMKGRLEIMKQKLLRLSKNKDNGILDGSHMFEQSIVYVPMAVLKEKV 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2906981 2920980 - Sed0028125.1 Sed08g0460 722236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0460 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 291 IPR013083 -
Sed08g0460 713 ProSiteProfiles 'Homeobox' domain profile. 494 554 IPR001356 GO:0003677(InterPro)
Sed08g0460 713 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g0460 713 ProSitePatterns Zinc finger PHD-type signature. 238 289 IPR019786 -
Sed08g0460 713 SUPERFAMILY Homeodomain-like 496 560 IPR009057 -
Sed08g0460 713 ProSiteProfiles Zinc finger PHD-type profile. 235 292 IPR019787 -
Sed08g0460 713 SMART HOX_1 496 558 IPR001356 GO:0003677(InterPro)
Sed08g0460 713 MobiDBLite consensus disorder prediction 352 370 - -
Sed08g0460 713 MobiDBLite consensus disorder prediction 327 370 - -
Sed08g0460 713 MobiDBLite consensus disorder prediction 555 574 - -
Sed08g0460 713 Pfam PHD-finger 238 289 IPR019787 -
Sed08g0460 713 FunFam pathogenesis-related homeodomain protein-like 229 289 - -
Sed08g0460 713 CDD homeodomain 502 555 IPR001356 GO:0003677(InterPro)
Sed08g0460 713 Pfam Homeodomain 505 549 IPR001356 GO:0003677(InterPro)
Sed08g0460 713 SUPERFAMILY FYVE/PHD zinc finger 228 294 IPR011011 -
Sed08g0460 713 MobiDBLite consensus disorder prediction 439 465 - -
Sed08g0460 713 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 32 707 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Sed08g0460 713 MobiDBLite consensus disorder prediction 556 572 - -
Sed08g0460 713 MobiDBLite consensus disorder prediction 1 22 - -
Sed08g0460 713 Gene3D - 496 568 - -
Sed08g0460 713 FunFam pathogenesis-related homeodomain protein 496 560 - -
Sed08g0460 713 SMART PHD_3 237 290 IPR001965 -
Sed08g0460 713 CDD PHD_PRHA_like 237 289 IPR045876 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0460 Sed-Chr8:2906981 Sed08g0462 Sed-Chr8:2906981 0.00E+00 dispersed
Sed08g0460 Sed-Chr8:2906981 Sed08g0461 Sed-Chr8:2906981 3.80E-308 tandem
Sed12g2183 Sed-Chr12:32352782 Sed08g0460 Sed-Chr8:2906981 1.60E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39281 PF00628 PHD 4.00E-10 CL0390 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0460 - - - 0.0