Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0462 | ATGAGAGATACTGAAAGGGGATTGACCCAGAAGGAACCAAGAAAATTTTCTCACTCCAAGGTGGAAAGTGGATCAGAATTAATCTTGAAGTTGAAACTGTGTAGCAAAATATCTCATTCCAAACAGAAAAAATCAAGAACTATATCACATGCACATGCAATTGGTTCAGCAATCAAGAGGCTACCTCATCCTAAACCTTTGAGCAAGGGGAATAAAAATGTGACAATTAGACAACTGGCTGGTAAAAGAATTCTGCTAAAAAAACTTGATTCAGAATCTTCCAAGGAGTTAGTTTTGTCAAAGCTTCGAGGTGGAAAATCTGTGCCATCGACTAATACGAAAGGGAATGCGGAAAAGGTTGAGCCAGTGGCCAAGATAAACCAACGAAGGAAGAGGAGGAAGCACAAAGTAACAAAGGAAAAGGTTGAGTTAGATGAAGCTTCTCGTCTACAGAGGAGAGCTAGATACCTTATAATTAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCCGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATAAAGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAATTCAAACTTGGAATCCGTGATGCTATTCACCAGCTGGATTTGCTTGGTTCAGTAGGATGCATGGAAGACTCTGTTATTGGTCCTGATGGATCTGTATACCACGAACATATATTCTGTTCGAAATGCAAGTTGGGTGAAGCTTTTCCAGAGGATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCACCAAAAGTGTCTGGATCCACCATTAGACACGAAAAATATTCCTCCTGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTACAAGATGGAAATATTAGAAGGAATGAATGCTCATCTCGGTACTCGGTTCTCGATGAACATTAGCTGGGAGGATGTTTTCAAAGACGAAGCGGCTTCCCCAGATCGTGGTAATGCATTGCTTAATCATGAGGAAGATTGGCCCACAGATGATTCTGCAGATGATGACTACAATCCAGATAAGAATGAGAATGACTATGACAACCCAAGTGGGGAAAAATATGATAAGGATGCTTTGGAGGAGTCAGTTAGTTCAAGCAGCTTGAGTTGGTCTTTAGATGGTGAGGATTTAACTTATAAAGATGGTATTGGATGTGAAGAACACTTTGGTGCTGGCAACACCATAGTTTCTGATGGCTCCAGTGAAGTGGCCATCATATGTGGCCGTCGCCGGCAGCAAGCTGTTGATTATAAAAAGTTACATGTCGAAATGTTTGGAAAGGATGCTCCAGCACAAGAACAAGTTAGTGAAGATGAAGACTGGGGGCCTACAAAAAGAAGCCGGAGAGAAAAGGAGTCCGATGCTGCGACTGCGAGAACTCTTATGTCTCTTTGTGAAAATGAAAAAAAGAGTCAGAATATTGATGTGGATGCAGAGAAAAAACTTGTCAATTCGCAAAGCCGATCATTTTTCAGAATTCCTCGTTATGCAGTCGAGAAACTTCGCCAAGCGTTCGCTGATAATGAACTTCCCTCCAGAGATGTCAAGGAGAATCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCAGAGGGAGCAACACAATCCCATAGTCCTAATAAGACATTCGACGAGTCCGGATTAGCAGATACAAAAGAAATGGCCGAAAATCTGGAATCAGAGGACGCATCAATAAAAGAACTGCTGCTGAAATCGCGCAATAGTAGTCCTTACAAGAAAAGGCAGCACAGAAAAACATCACTTGTATCTTCCAACAATAACAAGGTATCATTTCCCCATATCCAAATATTACTTTTTTTCTTTCTTTCCCTAGCTGTGTGCTTCCTGACAAAATATAACAAAGACAAACAGCATTCAGGGAAATTCCTATTCAGATGTGTTGGAAGTTTTTTCAGAAAGAAAATGCATTGGAAAAGGCTTAAACTATGA | 2031 | 40.72 | MRDTERGLTQKEPRKFSHSKVESGSELILKLKLCSKISHSKQKKSRTISHAHAIGSAIKRLPHPKPLSKGNKNVTIRQLAGKRILLKKLDSESSKELVLSKLRGGKSVPSTNTKGNAEKVEPVAKINQRRKRRKHKVTKEKVELDEASRLQRRARYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAMKQILKFKLGIRDAIHQLDLLGSVGCMEDSVIGPDGSVYHEHIFCSKCKLGEAFPEDDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCEYKMEILEGMNAHLGTRFSMNISWEDVFKDEAASPDRGNALLNHEEDWPTDDSADDDYNPDKNENDYDNPSGEKYDKDALEESVSSSSLSWSLDGEDLTYKDGIGCEEHFGAGNTIVSDGSSEVAIICGRRRQQAVDYKKLHVEMFGKDAPAQEQVSEDEDWGPTKRSRREKESDAATARTLMSLCENEKKSQNIDVDAEKKLVNSQSRSFFRIPRYAVEKLRQAFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGATQSHSPNKTFDESGLADTKEMAENLESEDASIKELLLKSRNSSPYKKRQHRKTSLVSSNNNKVSFPHIQILLFFFLSLAVCFLTKYNKDKQHSGKFLFRCVGSFFRKKMHWKRLKL | 676 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2906981 | 2920980 | - | Sed0028125.3 | Sed08g0462 | 722238 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0462 | 676 | ProSiteProfiles | 'Homeobox' domain profile. | 494 | 554 | IPR001356 | GO:0003677(InterPro) | |
Sed08g0462 | 676 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed08g0462 | 676 | ProSitePatterns | Zinc finger PHD-type signature. | 238 | 289 | IPR019786 | - | |
Sed08g0462 | 676 | ProSiteProfiles | Zinc finger PHD-type profile. | 235 | 292 | IPR019787 | - | |
Sed08g0462 | 676 | SMART | HOX_1 | 496 | 558 | IPR001356 | GO:0003677(InterPro) | |
Sed08g0462 | 676 | MobiDBLite | consensus disorder prediction | 352 | 370 | - | - | |
Sed08g0462 | 676 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 32 | 620 | - | GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER) | |
Sed08g0462 | 676 | MobiDBLite | consensus disorder prediction | 327 | 370 | - | - | |
Sed08g0462 | 676 | MobiDBLite | consensus disorder prediction | 555 | 574 | - | - | |
Sed08g0462 | 676 | Pfam | Homeodomain | 505 | 549 | IPR001356 | GO:0003677(InterPro) | |
Sed08g0462 | 676 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 291 | IPR013083 | - | |
Sed08g0462 | 676 | CDD | homeodomain | 502 | 555 | IPR001356 | GO:0003677(InterPro) | |
Sed08g0462 | 676 | SUPERFAMILY | Homeodomain-like | 496 | 560 | IPR009057 | - | |
Sed08g0462 | 676 | MobiDBLite | consensus disorder prediction | 439 | 465 | - | - | |
Sed08g0462 | 676 | MobiDBLite | consensus disorder prediction | 556 | 572 | - | - | |
Sed08g0462 | 676 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sed08g0462 | 676 | FunFam | pathogenesis-related homeodomain protein | 496 | 560 | - | - | |
Sed08g0462 | 676 | SMART | PHD_3 | 237 | 290 | IPR001965 | - | |
Sed08g0462 | 676 | Gene3D | - | 496 | 568 | - | - | |
Sed08g0462 | 676 | CDD | PHD_PRHA_like | 237 | 289 | IPR045876 | - | |
Sed08g0462 | 676 | SUPERFAMILY | FYVE/PHD zinc finger | 228 | 294 | IPR011011 | - | |
Sed08g0462 | 676 | FunFam | pathogenesis-related homeodomain protein-like | 229 | 289 | - | - | |
Sed08g0462 | 676 | Pfam | PHD-finger | 238 | 289 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0460 | Sed-Chr8:2906981 | Sed08g0462 | Sed-Chr8:2906981 | 0.00E+00 | dispersed | |
Sed08g0462 | Sed-Chr8:2906981 | Sed12g2183 | Sed-Chr12:32352782 | 3.70E-260 | dispersed | |
Sed08g0461 | Sed-Chr8:2906981 | Sed08g0462 | Sed-Chr8:2906981 | 0.00E+00 | tandem | |
Sed08g0462 | Sed-Chr8:2906981 | Sed08g0463 | Sed-Chr8:2909053 | 3.70E-308 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39283 | PF00628 | PHD | 3.70E-10 | CL0390 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0462 | - | - | - | 0.0 |