Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0469 ATGGCATCCCAGGCTGTCCGCGAGTGGGTTGGGATTAACAACTTTGCAAAGGCCACACAAGAAAAATTACTTGAGTTGCTAGGAAGACTGAAGCTGGAGAATGTGAGCACTTTGACGATACTTGTAATGGGAAAAGGTGGTGTTGGAAAGTCATCCACTGTGAATTCCATTGTTGGTGAAAGAGCTGTATCTGTTAATCCTTTTCAGGCAGAAGTACCAAGGCCTATGATGGTTTCTCGCTCTAGGACTGGATTTACATTAAATGTCATCGATACGCCTGGCATTATTGAAGGAGGTTATATCAATGACCAGGCACTTGAGATCATAAAACGCTTTCTTTTGAATAAAACCATAGATATTCTTCTCTACGTGGACCGCTTGGATGCGTATAGAGTGGATAATTTGGAAAAGCAGGTTATTAAGGCCATAACAGACAGCTTCGGTAAAGCAATATGGAATAGAGCTTTGGTCGTCCTCACTCATGCTCAGTTTTCCCCACCAGATGGATTACCCTATGATGAATTTTTATCCAGAAGATCAGAAGCTCTGCTGAAAATAGTCCGATCGGGCGCCTCATTCAACAAAAATGATATTCAGGGATCAAATATTCCAGTTGTTTTAGTTGAGAACAGTGGACGGTGCAACAAGAACGAGAAAGATGAAAAGGTTCTTCCGAATGGGATTGCTTGGATTTCTCACTTGGTTGAGACAATCACCACAGTTGTGTTAAATGGAAGCAAGTCTATTGTTGTTGATAAGAAGTTGATCGATGGCCCAAACCCTAATCAGAGGGGAAAGATGCTGATTCCCTTTATTTTTGCTCTTCAATATCTCTTTGTCGTTAAACCTATCGAACGAGCAATACGAAGTGATATATCACAAGAAAGCAGAGCGTCGTGGGAGCTGCGCGATACAAGCTCACCCAGACGCAAGTATTGA 939 42.17 MASQAVREWVGINNFAKATQEKLLELLGRLKLENVSTLTILVMGKGGVGKSSTVNSIVGERAVSVNPFQAEVPRPMMVSRSRTGFTLNVIDTPGIIEGGYINDQALEIIKRFLLNKTIDILLYVDRLDAYRVDNLEKQVIKAITDSFGKAIWNRALVVLTHAQFSPPDGLPYDEFLSRRSEALLKIVRSGASFNKNDIQGSNIPVVLVENSGRCNKNEKDEKVLPNGIAWISHLVETITTVVLNGSKSIVVDKKLIDGPNPNQRGKMLIPFIFALQYLFVVKPIERAIRSDISQESRASWELRDTSSPRRKY 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2936419 2940376 - Sed0028230.1 Sed08g0469 722245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0469 312 Pfam AIG1 family 38 188 IPR006703 GO:0005525(InterPro)
Sed08g0469 312 Gene3D - 1 268 IPR027417 -
Sed08g0469 312 PIRSF Toc33/toc34 1 309 IPR005688 GO:0006886(InterPro)|GO:0009707(InterPro)|GO:0015450(InterPro)
Sed08g0469 312 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 37 244 IPR045058 -
Sed08g0469 312 NCBIfam GTP-binding protein 1 310 IPR005688 GO:0006886(InterPro)|GO:0009707(InterPro)|GO:0015450(InterPro)
Sed08g0469 312 FunFam Translocase of chloroplast 2 268 - -
Sed08g0469 312 ProSiteProfiles AIG1-type G domain profile. 35 259 IPR006703 GO:0005525(InterPro)
Sed08g0469 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 256 IPR027417 -
Sed08g0469 312 CDD Toc34_like 7 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0469 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2228 Sed-Chr5:35033387 Sed08g0469 Sed-Chr8:2936419 2.70E-32 dispersed
Sed08g0469 Sed-Chr8:2936419 Sed12g2191 Sed-Chr12:32380620 2.20E-119 dispersed
Sed12g2190 Sed-Chr12:32380620 Sed08g0469 Sed-Chr8:2936419 3.50E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003669 1 0 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 8 2 46