Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0480 ATGGCGGCGGCGCATCCGTCACCGGAATTCATATTCCGATCAAAACTCCCAAGCATCACAATCCCCAATCACCTCCCCTTACACGAATACTGCTTCGAAAAAATCTCCGAATTCAAAAGCCGACCATGTCTAATTGACGCCGCCACCGGCGACACCTACACCTTCGGCGAACTCGGAATCAGAAAATCGGACGTCATCATGCTCCTCCTCCAAAACTCCCCGCACTTCATCTTCTCCTTCCTAGGCGCGGTCGCCACGACAGCGAACCCGTTCTTCACGACGACAGAAATCGACAAACAAGCAGCCGACTCCGGGGCCAAGCTCATCGTAACCGAAGCCGCCTTCGCCGAAAAAGTGAAGAACATCTCTGGAAAGAACGGCGAGTCCATGAACCTCATATTCATCGACCATCATGATATAACCGATGATCACGCAAATGAAATGCCGGAGGTGAAAATAAGCCCAAACGACGTCGTTGCGCTGCCGGGCTGGTTACCAGCGTGGCACATGTACATGACACGTGACGACGTCGTTTTGTGCGTGCTTCCGTTGTTTCACGTTTATTCGTTGAACGTGATAATGATGTGTTCGTTGCGGGTGGGGGCGGCGATTTTGATCGTGCGGAGGTTTGAGATTGAATCCGTTGTGGAGTTGGTTGGGAAGTATAAGGCGACGGTTGCGTTGTTTGTGCCGCCGATTGTGTTGGCGATTGCTAAGAGTCCGCCGGTGGGGCGTTCCGACATGTCCTCGATACGGATGGTGGTGTCGGGGGCGGCGCCGCTTGGGAAGGAGCTTGAACATGCGTTTAGAGCCAAGCTTCCGCATGCTATTTTGGGACTGGGATATGGAATGACGGAGTCGGGGTCGATGTTAACGATGACATTAACGTTTGCAAAGGAGAAGGTGGAGGTGAAATCGGGAGGTTGTGGGACGGTGATGAGAAATTCAGAGATGAAGATTATAAACCCTCAAACCAGAGCTTCTCTTCCGAGGAATCAAGTTGGAGAGATTTGGTTTAGAAGCTCTCAGTTGATGATAGGATACCTCAACGATGAAGAGGCAACGAAGAGCACAATCGACCAAGACGGATGGCTGCACACCGGCGACATAGGTTTCGTCGACGACGACGGCGAGGTTTTCATCGTCGATCGTCTCAAGGAACTCATCAAATACAAAGGTTTTCAAGTGGCGCCGGCGGAGCTGGAAGCTCTGCTCATTTCTCACCGCCACATCGCCGACGCGGCGGTTATCCCTATGAAAGATGAAGTTGCCGGAGAGGTGCCGGTTGCGTTCATTGTCCGATCCAACGGTTCCGGCATCGCCGAGGATGATATCAAGCAATACATCTGCAAACAGGTTGTGTTTTATAAGAGGATTAATCGTGTTTTCTTCGTGGACTCAATCCCTAAAAGTCCTTCTGGCAAAATCTTGCGGAAACAACTTAGAGCGTTGCTCGCCGCCAGTATTCCAAATTAG 1476 51.42 MAAAHPSPEFIFRSKLPSITIPNHLPLHEYCFEKISEFKSRPCLIDAATGDTYTFGELGIRKSDVIMLLLQNSPHFIFSFLGAVATTANPFFTTTEIDKQAADSGAKLIVTEAAFAEKVKNISGKNGESMNLIFIDHHDITDDHANEMPEVKISPNDVVALPGWLPAWHMYMTRDDVVLCVLPLFHVYSLNVIMMCSLRVGAAILIVRRFEIESVVELVGKYKATVALFVPPIVLAIAKSPPVGRSDMSSIRMVVSGAAPLGKELEHAFRAKLPHAILGLGYGMTESGSMLTMTLTFAKEKVEVKSGGCGTVMRNSEMKIINPQTRASLPRNQVGEIWFRSSQLMIGYLNDEEATKSTIDQDGWLHTGDIGFVDDDGEVFIVDRLKELIKYKGFQVAPAELEALLISHRHIADAAVIPMKDEVAGEVPVAFIVRSNGSGIAEDDIKQYICKQVVFYKRINRVFFVDSIPKSPSGKILRKQLRALLAASIPN 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3055295 3075592 - Sed0008076.1 Sed08g0480 722256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0480 491 FunFam 4-coumarate--CoA ligase 2 387 488 - -
Sed08g0480 491 CDD 4CL 21 481 - -
Sed08g0480 491 Gene3D - 387 488 IPR045851 -
Sed08g0480 491 Gene3D - 4 162 IPR042099 -
Sed08g0480 491 SUPERFAMILY Acetyl-CoA synthetase-like 15 487 - -
Sed08g0480 491 Pfam AMP-binding enzyme C-terminal domain 400 475 IPR025110 -
Sed08g0480 491 Gene3D - 163 386 IPR042099 -
Sed08g0480 491 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 162 - GO:0016405(PANTHER)
Sed08g0480 491 Pfam AMP-binding enzyme 57 160 IPR000873 -
Sed08g0480 491 Pfam AMP-binding enzyme 170 349 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0480 Sed-Chr8:3055295 Sed09g1419 Sed-Chr9:38064399 6.40E-153 dispersed
Sed12g2223 Sed-Chr12:32627305 Sed08g0480 Sed-Chr8:3055295 5.80E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0480 K01904 - csv:101218077 669.463