Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0508 ATGCAGAGGCAGACGAGGTATATGGAGAGGACAAACTCCATGAGGGAGAAACGGGGCTTGGATGGCGGAGAAGATGAACTGCCGGAGCGAAAGCGACCAGCTCTTGCTAGTGTGATTGTAGAAGCCCTGAAGGTGGATAGCTTACAGAAGCTCTGCTCATCATTGGAACCAATACTTCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCTAAGATAGGTCCTGCTAGAATTACTGGAAGGTCTTCTCCTAAAAGGATCGAAGGTCCTGATGGAAGAAACTTGCAACTGCAGTTTAGGTCTAGATTGTCTCTTCCGCTATTCACTGGAGGGAAAGTAGAAGGTGAACAGGGTGCAGCAATCCATGTTGTTCTGCTTGATGCCAACACAGGCATTGTAGTACCGTCTGGACCTGAAGCCTTGGCAAAATTAGACATTGTGGTACTTGAAGGTGATTTCAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAAGTCATGTGGTAAAAGAGCGTGAAGGAAAAAGGCCTCTATTGACTGGTGACCTGCAGGTTACTCTCAAGGAAGGTGTTGGAACTCTAGGGGATCTGACTTTCACTGATAACTCGAGTTGGATTAGGAGCAGAAAGTTCAGACTTGGGTTAAAGGTGGCTTCAGGGTTTTGTGAAGGTGTACGCATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCATCGGGGAGAATTGTATAAAAAACATTACCCACCTGCATTAAGCGATGAGGTGTGGAGACTGGAGAAAATTGGAAAGGACGGTTCATTTCACAAACGACTGAATAAACAGGGAATACACTCTGTTGAAGACTTTCTCAGAATGGTGGTTCGGGATTCTCAAAAACTACGAAGTATTCTTGGAAGTGGGATGTCAAATAAGATGTGGGAGGCTCTTTTAGAACATGCTAAGACCTGTGTTCTGAGTGGGAAGCTGTATATTTATTATCCAGAGGAAACCAGAAATGTTGGTGTTGTTTTTAACAACATCTATGAGCTCAACGGCCTGATTACAGGGGAACAATACTTTTCTGCCGACTCTCTTTCTGATAGTCAGAAGGTATTTGTAGATACGCTAGTGAATAAAGCGTATGAAAATTGGAATCAAGTCGTAGAGTATGATGGAAAATCACTTTTGAGCTCTAAGCAGTCTAAGAAGTTCAATGCACCCCGAAATGACTTTCAAGGAGGTCATCTTGATCTTTCTAATAATCTAGACCATGGGTCACTATCCCGCATGCCAGTAGCAGTTCATCCTCAGCAGCCTGTAGTGGATCCAGAACTCTCAGTTACAGGGTATAATGATAATTCAACTCCAAGATATTCAACGCAGCCTCAGTTTGCGAATCCAACTTCTCGACCCCAATATGACAACACCTCATTTACTACAAACGAGTTGATCGGCAGTTCTAACCATGGTCATATCACAAGAAACGACAATAGTGCATTTGGTTTGGCTCTTGGTCCTCCTCAAGCATCCTCTTCAGGGTTTCAGATGCTTGGTTCTTCAGTTCAGGAATCTAATATGAATCCATTTGAGTGGTCAAACCATAGAGACAAGGGAGTTGACGACTACTTTACGGAGGATGAGATTCGTATGAGAAGTCATGAGATGCTGGAAAATGAAGATATGCAACAATTGTTGCGAATGTTTAGCATTGGAGCGCATGGGTCTGTTAATGGCCATGATGATGGTTTTTCATTCCCATCATTCATGCCTTCACCATTGCCAAATTTCGATGATCGCAACCGTTCTGGAAAAGCTGTGGTAGGTTGGTTGAAGATCAAAGCTGCAATGAGGTGGGGGTTCTTCATCAGGAAGAAAGCAGCCGAGAGACGACGTGCACAGATTGTCGAGTTGGACGAGGAATAG 1917 43.77 MQRQTRYMERTNSMREKRGLDGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARITGRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGAAIHVVLLDANTGIVVPSGPEALAKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALSDEVWRLEKIGKDGSFHKRLNKQGIHSVEDFLRMVVRDSQKLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVFVDTLVNKAYENWNQVVEYDGKSLLSSKQSKKFNAPRNDFQGGHLDLSNNLDHGSLSRMPVAVHPQQPVVDPELSVTGYNDNSTPRYSTQPQFANPTSRPQYDNTSFTTNELIGSSNHGHITRNDNSAFGLALGPPQASSSGFQMLGSSVQESNMNPFEWSNHRDKGVDDYFTEDEIRMRSHEMLENEDMQQLLRMFSIGAHGSVNGHDDGFSFPSFMPSPLPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRRAQIVELDEE 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3327510 3334757 - Sed0008073.2 Sed08g0508 722284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0508 638 MobiDBLite consensus disorder prediction 9 29 - -
Sed08g0508 638 MobiDBLite consensus disorder prediction 1 29 - -
Sed08g0508 638 Pfam Calmodulin binding protein C-terminal domain 326 388 IPR046829 -
Sed08g0508 638 Pfam Calmodulin binding protein central domain 256 321 IPR046830 -
Sed08g0508 638 PANTHER OS02G0177800 PROTEIN 14 629 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Sed08g0508 638 Pfam Calmodulin binding protein-like N-terminal domain 96 243 IPR046831 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0508 Sed-Chr8:3327510 Sed12g1899 Sed-Chr12:30164682 6.90E-91 dispersed
Sed08g0507 Sed-Chr8:3327510 Sed08g0508 Sed-Chr8:3327510 0.00E+00 tandem
Sed08g0508 Sed-Chr8:3327510 Sed08g0509 Sed-Chr8:3327510 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0508 - - - 0.0