Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0534 ATGTTGATAACACTCACAGAAGCTGCTGCTATGGCGGCTTCTTCTTCTTCTTCTTCGCCCCTTTGGTTCTCGCAATCTTCCACCAATTCTAAGCGCTTTTCTAGACCTAGACCTAGAGTTTCAGTCCTCGGCCGAGCTTCCTTCACTGTTCCCAACAACCGCAGCGCCGCTTTCAAATCCTTCACCCCTGCTCTCACTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCCTTGGGCATCCGTCCAGATCTTTCTTCTGAGTTAAGTAGTACGTGGGGAAGTTTCCTTGGCTTTTGGGGGCAAACGTTTGAGAGTTCTTCAAGCACAAAAAAGGATAAATCTCCCTCGGCACGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGACTTCTTCAAAGGTCCATTGCCAGGAAAATTTCTTCAGCTCTTGGGCTATTTAGCACTATCAAGGCTTGGAACCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTATTGGGAACTTGGATCAGAATAGCTTATTGAGCACTTTAGATTCGTTTTCTGGAGGAGGCATTGGTAGGCTAGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCATCGATTGTCTTTCAGCTTCTTACACAAATTTATCCAAAATTGCAAGAGCTTCAGAAAAGAGAAGGTGAAGCTGGGCGAAAGAAAATTCTTCAATATACTCGATATGCCTCGGTTGGGTTTGCAATCGTACAAGCAATTGGTCAAGTTCTCTTCCTTCGTCCCTACGTTAATGATTTTAGTTCAGAGTGGGTACTCTCTTCTGTTACTTTATTAACACTCGGCTCGGTCATAACAACGTACATTGGAGAACGGATAACAGACCTAAAGCTAGGGAATGGAACATCTCTTTTAATTTTCACTAGCATCATCTCCTATCTACCAGCATCCTTTGGAAGAACAACTGCACAGGCTTTCCAGGATGGTAACTATGTTGGATTGGTTGCTATCATAATCTCCTTTTTCTTATTGGTACTCGGAATTGTATATGTTCAGGAAGCAGAACGGAAAATCCCGCTCAACTATGCGTCAAGATACACGAGCAAAGGCGGAGGGCTTCAGAAATCTGCTTACCTGCCCTTCAAGGTAAATAGTTCTGGTGTAATGCCGATCATTTTTTCTACGTCAACATTAGCCCTTCCGGGTACTCTAGCTCGCTTCACGGGTTTATCCGCCCTAAAGAACGCTGCACTTGCTTTGAATCCAGGAGGTTCATTCTATCTGCCAACCAACATCCTTTTGATAGCCTTTTTCAACTATTACTACACATTCCTACAGTTGGATCCAGATGATGTGAGTGAACAGTTGAAGCGGCAGGGAGCTTCAATTCCCCTCGTCCGTCCGGGAAAAAGCACAGCTTCATATCTGAAAGCGGTCCTAAGTCGGATATCAGTTCTTGGTTCCGCTTTCTTGGCAATCCTTGCTGCTGGTCCTGCAGTGATCGAGCAAACAACGCATCTGACTGCTTTTCGTGGATTTGCAGGAACCTCTGTTCTTATTCTTGTAGGTTGTGCTACAGACACTGCCAGAAAGGTTCAGGCTGAGATAATTTCCCAGAAGTACAAGAACATAGAGTTCTATGATATTGATAGGTATACTCCATGA 1659 44.85 MLITLTEAAAMAASSSSSSPLWFSQSSTNSKRFSRPRPRVSVLGRASFTVPNNRSAAFKSFTPALTSNSSESSVFDPLGIRPDLSSELSSTWGSFLGFWGQTFESSSSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGTYIPLGGVNREAFIGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINASIVFQLLTQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFSSEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTTAQAFQDGNYVGLVAIIISFFLLVLGIVYVQEAERKIPLNYASRYTSKGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSALKNAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASYLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3518698 3523808 + Sed0018519.1 Sed08g0534 722310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0534 552 NCBIfam preprotein translocase subunit SecY 142 539 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Sed08g0534 552 ProSitePatterns Protein secY signature 1. 194 213 IPR030659 -
Sed08g0534 552 Gene3D SecY subunit domain 134 539 IPR023201 -
Sed08g0534 552 Hamap Protein translocase subunit SecY [secY]. 131 543 IPR026593 -
Sed08g0534 552 FunFam Preprotein translocase subunit SECY, chloroplastic 134 539 - -
Sed08g0534 552 MobiDBLite consensus disorder prediction 18 35 - -
Sed08g0534 552 SUPERFAMILY Preprotein translocase SecY subunit 135 533 IPR023201 -
Sed08g0534 552 ProSitePatterns Protein secY signature 2. 286 303 IPR030659 -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 143 161 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 193 213 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 384 403 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 293 316 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 478 496 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 267 292 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 423 445 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 512 530 - -
Sed08g0534 552 PRINTS Preprotein translocase SecY subunit signature 235 258 - -
Sed08g0534 552 Pfam SecY 195 526 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Sed08g0534 552 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 134 542 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
Sed08g0534 552 MobiDBLite consensus disorder prediction 18 38 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0534 K10956 - csv:101222431 913.679