Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0535 ATGGAATTGAGGAAAGAAAAGCTTGTTAGGTTTTACTCTGATCCCAAAAAGCATAAGAAATCTGCTATTGGAAACAACGATGAAGCAATGCAACTCGAGAGGTCATCATCGAAATACTATATTCCGTCGTCAGCATTCTTAATACCTGGCAATGGACTAGGGGGAAGCATAAGTAAATTCGCCGAAACTTTTAGTACTGAGAAGTCCAAGGTGTTTTCAGAGGACCATGAACCATGGAGGAAAAGAATACTAGACCCTGGTAGCAGAATTGTTTTGAAATGGAACCGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTCGACCCCTTGTATCTTTTCTTGCCCTCTTTGGTTGGGAATGGACAATCCGCATGTGTGAGGACAGACTGGAAATTGCGGATTGTTGTGACATGTTTACGGACTGTAGCAGATTTTTTCTATCTTCTGCACATGATTATCAAGTTCAGAACAGCTTATGTTGCTCCGAGCTCTCGAGTTTTTGGGAGAGGTGAGCTTGTGATGGATTCAAAGATGATAGCAAAGAGGTATATTAGATCTGACTTTTTCGTTGATCTAATTGCCACCCTGCCTCTCCCTCAGATTGTCATCTGGTTCATCATACCTGCAACAAGAAGTCGTCTAACCGATCATACAAACAATGCTCTTGCACTAATTGTTCTGCTTCAATATATTCCGAGATTATATTTGATTTTCCCTCTAAGTTCAGAGATCATCAAAGCAAATGGAGTTGTCACAAAAACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCATGTTCTAGGTGCTACATGGTATTTGTTGTCAGTTGATAGATATACATCATGCTGGAAATCATTTTGTAAGAAGAAGGAATATAATCCAGTAGAATGCAATGTAACTTTTTTTGATTGCGATACGTTTAACCTTAATGTCCGCAATATATGGGCAAATAGTACACTTGTTTTTGACAAATGTGGCACGAATGGAATTTTCAAGTATGGTCTTTTTGAGAATGCAATGTCAAAGAAGGTGGTCTTTTCAAGCTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGTCAAAATTTGGAAACAACCACTTTCATCGGCGAGACGCTGTTTGCTGTGCTTATTGCCATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACATATCTGCAATCCCTGACTGTAAGGCTTGAAGAATGGAGACTAAAGAAAAGGGACACTGAAGAGTGGATGAGGCATCGTCAACTCCCCGAAGACTTGAAACGACGAGTTCGACGTTTTGTACAGTATAAGTGGGTAGCAACTCGAGGAGTTAATGATGAAGCCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGTGATATTCAGTGCCACCTCTGTTTAGATCTTGTCCGACGAGTCCCTTTCTTTGCACAGATGGATGATCAGCTACTCGATGCAATATGTGAACGCCTGGTATCCTCCTTGAGCACTGAGGGTACTTATATTGTACGAGAAGGCGAACCGGTAACTGAGATGATGTTCATTATCCGAGGCAGACTGGAAAGTTCTACTACAAATGGAGGTCGCTCTGGTTTCTTCAACACCATAAAGTTGCGTCCTGGAGACTTTTGTGGGGAGGAACTACTTTCTTGGGCCTTGCACCCAAAATCCACCGCCAACTTGCCCTCCTCAACTAGAACAGTTAGAGCACTCAATGAAGTTGAAGCTTTTGCACTCCGTGCTGAAGATCTTAAATTTGTGGCCAACCAATTTCGACGTCTGCACAGTAAAAAGTTGCAGCACACGTTCCGCTTTTACTCTCATCATTGGAGAACATGGGCGGCTTGCTTTATTCAGGCCGCTTGGCTTCGCCATAAGAAAAGGATGATGGCGAAAGATCTCTTAATGAAGGAATCATTTATATTACCTGACAATGTGGTCAATGAAACTGGCCAAGGAGCTGGGGAACAATTTTCTGTTGTTTCAAATCCTTCTCAGACAAAGATGTACATGGATGTTACCTTACTAGCTTCAAGGTTTGCTGCAAACACAAGGAGGGGTGCTCAGAGAATGAAAGATGACATGCCAAAGTTACAGAAGCCTGATGAACCCGACTTTTCTGTCGAGCCGGATAGATAA 2187 42.2 MELRKEKLVRFYSDPKKHKKSAIGNNDEAMQLERSSSKYYIPSSAFLIPGNGLGGSISKFAETFSTEKSKVFSEDHEPWRKRILDPGSRIVLKWNRVFICSCLLALFVDPLYLFLPSLVGNGQSACVRTDWKLRIVVTCLRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDSKMIAKRYIRSDFFVDLIATLPLPQIVIWFIIPATRSRLTDHTNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCKKKEYNPVECNVTFFDCDTFNLNVRNIWANSTLVFDKCGTNGIFKYGLFENAMSKKVVFSSFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVNDEAILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGEPVTEMMFIIRGRLESSTTNGGRSGFFNTIKLRPGDFCGEELLSWALHPKSTANLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWLRHKKRMMAKDLLMKESFILPDNVVNETGQGAGEQFSVVSNPSQTKMYMDVTLLASRFAANTRRGAQRMKDDMPKLQKPDEPDFSVEPDR 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3524581 3531470 - Sed0018282.1 Sed08g0535 722311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0535 728 SMART cnmp_10 491 622 IPR000595 -
Sed08g0535 728 Gene3D Helix hairpin bin 416 482 - -
Sed08g0535 728 CDD CAP_ED 491 622 IPR000595 -
Sed08g0535 728 SUPERFAMILY Voltage-gated potassium channels 86 413 - -
Sed08g0535 728 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Sed08g0535 728 Gene3D - 116 415 - -
Sed08g0535 728 Gene3D Jelly Rolls 489 609 IPR014710 -
Sed08g0535 728 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 710 - -
Sed08g0535 728 SUPERFAMILY cAMP-binding domain-like 421 613 IPR018490 -
Sed08g0535 728 Pfam Cyclic nucleotide-binding domain 514 603 IPR000595 -
Sed08g0535 728 MobiDBLite consensus disorder prediction 702 728 - -
Sed08g0535 728 FunFam Cyclic nucleotide-gated ion channel 1 489 607 - -
Sed08g0535 728 PRINTS EAG/ELK/ERG potassium channel family signature 269 279 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0535 728 PRINTS EAG/ELK/ERG potassium channel family signature 152 161 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0535 728 PRINTS EAG/ELK/ERG potassium channel family signature 404 413 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0535 728 PRINTS EAG/ELK/ERG potassium channel family signature 386 397 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0535 728 PRINTS EAG/ELK/ERG potassium channel family signature 454 461 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0535 728 PRINTS EAG/ELK/ERG potassium channel family signature 360 377 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0535 728 ProSiteProfiles cAMP/cGMP binding motif profile. 491 574 IPR000595 -
Sed08g0535 728 Pfam Ion transport protein 97 418 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2841 Sed-Chr5:39547040 Sed08g0535 Sed-Chr8:3524581 3.40E-208 dispersed
Sed08g0535 Sed-Chr8:3524581 Sed13g2104 Sed-Chr13:25724430 3.00E-276 dispersed
Sed12g2238 Sed-Chr12:32810980 Sed08g0535 Sed-Chr8:3524581 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0535 K27629 - csv:101218643 1343.18