Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0554 ATGGTTTCTAAGCTTTTCTGTTTGATCATTTTTTGCTCTGTTTTGCTCTGTTTTTCGTATGAACCTCGAAACCCTGAAGTGGATGCTTTGATTAATGTGAAGAAGACATTGAATGATCCACACTCTGTTCTTAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGCTCTTCTGAAAACCTCGTTATAGGACTGGGAGCTCCGAGCCAGTCTCTTTCAGGAACCTTATCTGGGTCGATTGGAAACCTTACAAATCTTCGCCAAGTGTTGTTGCAGAATAACAACATTTCTGGTCCTATTCCCAATGAACTTGGAGCCCTCCCATTGCTTCAAACATTAGATCTCTCAAACAATCGGTTCTCTGGTCTTATTCCAGCTTCCTTTGGTCAGCTGAATGGTCTACGTTACTTGAGGTTGAACAATAATAGCTTGTCCGGGCCTTTTCCTGTGTCTCTAGCCAAAATCCCCCAACTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGGACATTCAATGTGGTGGGAAATCCATTGATTTGTGGAAGTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCTATGCGGTTCCTCTTTCTTTCGCTCTCGAATCGACCCCTGGTAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGCTTTTCTGATACTCTTAGCACTTGGAATTATTTGGCGAAGAAGAAATCACAAGACCAAAACCATCCTAGACATCAATGTAAACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGGAACTTCAGTTTCAAAGAGCTGCAGTTAGCAACAGATCATTTTAGTTCCAAACATATACTTGGGGCTGGAGGATTTGGTAATGTATACAAGGGAAAGCTCGGAGATGGGACTACGGTGGCTGTGAAACGGCTTAAAGATGTCACAGGTACAACCGGAGAGTCGCAATTTCGCACCGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTATCCATACATGTCAAATGGCAGTGTAGCTTCCAGACTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCCATTGGAGCTGCAAGGGGTCTGCTCTACCTCCACGAGCAATGTGATCCCAAGATAATCCATAGAGATGTTAAGGCGGCCAATGTGCTTCTAGATGACTTTTGCGAAGCTGTCGTTGGTGATTTCGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACGGTTGGGCACATCGCTCCGGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGACGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGAATGAGAGCCCTTGAGTTTGGGAAAACAATCAACCAAAAAGGAGCTGTGCTTGAGCGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTAGACAAAGAGCTAGGGAACAACTATGATCAGATAGAAGTTGGGGAAATGTTACAAGTAGCTCTTCTATGCACTCAGTATTTACCTGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGGATGCTTGAAGGCGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCAGAATGACCTAAATGTCAACCTCTTTCATACACGAAACAGCTGCAAAAGTGCATACAACCCCACAAATGCATTCAATGGCAATGATAGGGAACATTCAAGCATGTTAAGTTTGTCAATGGACGATGACGACGAACGATCATTGGACTCCTTTGCCATGGAACTATCAGGTCCAAGGTAG 1908 45.34 MVSKLFCLIIFCSVLLCFSYEPRNPEVDALINVKKTLNDPHSVLSNWDEDSVDPCSWAMITCSSENLVIGLGAPSQSLSGTLSGSIGNLTNLRQVLLQNNNISGPIPNELGALPLLQTLDLSNNRFSGLIPASFGQLNGLRYLRLNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPLICGSSPSEGCSGSAYAVPLSFALESTPGRLRSKRIAVALGVSLSCAFLILLALGIIWRRRNHKTKTILDINVNNQEVGLVRLGNLRNFSFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTTVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAVLERVKKIQQEKKVELLVDKELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTQNDLNVNLFHTRNSCKSAYNPTNAFNGNDREHSSMLSLSMDDDDERSLDSFAMELSGPR 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3707909 3712885 - Sed0010315.1 Sed08g0554 722330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0554 635 ProSiteProfiles Protein kinase domain profile. 293 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0554 635 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515(InterPro)
Sed08g0554 635 Gene3D Transferase(Phosphotransferase) domain 1 370 582 - -
Sed08g0554 635 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524(InterPro)
Sed08g0554 635 Pfam Protein tyrosine and serine/threonine kinase 296 562 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0554 635 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Sed08g0554 635 MobiDBLite consensus disorder prediction 596 618 - -
Sed08g0554 635 Gene3D Ribonuclease Inhibitor 23 205 IPR032675 -
Sed08g0554 635 SUPERFAMILY L domain-like 24 188 - -
Sed08g0554 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0554 635 MobiDBLite consensus disorder prediction 596 610 - -
Sed08g0554 635 FunFam Somatic embryogenesis receptor kinase 1 262 369 - -
Sed08g0554 635 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Sed08g0554 635 SMART serkin_6 293 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0554 635 PRINTS Leucine-rich repeat signature 161 174 - -
Sed08g0554 635 PRINTS Leucine-rich repeat signature 116 129 - -
Sed08g0554 635 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 635 - -
Sed08g0554 635 FunFam Putative LRR receptor-like serine/threonine-protein kinase 23 205 - -
Sed08g0554 635 CDD TM_EGFR-like 225 258 - -
Sed08g0554 635 FunFam Somatic embryogenesis receptor-like kinase 1 370 582 - -
Sed08g0554 635 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
Sed08g0554 635 SUPERFAMILY Protein kinase-like (PK-like) 272 563 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0554 Sed-Chr8:3707909 Sed12g2260 Sed-Chr12:32916373 3.40E-231 dispersed
Sed08g0554 Sed-Chr8:3707909 Sed08g0555 Sed-Chr8:3707909 1.00E-259 tandem
Sed12g2259 Sed-Chr12:32916373 Sed08g0554 Sed-Chr8:3707909 4.90E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79597 PF07714 PK_Tyr_Ser-Thr 1.40E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0554 - - - 0.0